PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun002403

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Trihelix

Protein Properties

Length: 305aa MW: 34012.4 Da PI: 9.0427

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45918152	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-34617	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.7	1.4e-27	143	232	1	86
trihelix 1 rWtkqevlaLiearr.emeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+evlaLi++r ++ +++++++ k plWe++s+ m+e g++rs+k+ +ekwen+nk+++k+k+ +kkr s +s+tcpyf+ql Vun002403 143 RWPKDEVLALINLRCsSVSNNSNSNEekegNKVPLWERISQGMSELGYRRSAKRLQEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 232 8**********96345555554333455999**************************************8.9999******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.5E-18	142	233	No hit	No description
CDD	cd12203	1.35E-20	142	212	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
XKQEMEKMNK ELEMMAREQA IAGDRQTNII QILNKFSVPP ASNKSLKVVS NGSNLKSHTT 60 KNPNPSQNIP ATTENPTSSL AQDTLQLITN PSTSSSSVQV PQPNPSSSSL NSQNNINPAE 120 RNSVLNKSLS PNVGGEKDDV GRRWPKDEVL ALINLRCSSV SNNSNSNEEK EGNKVPLWER 180 ISQGMSELGY RRSAKRLQEK WENINKYFRK TKDVNKKRSL DSRTCPYFHQ LSSLYNEGKL 240 VLQSEKPESH TNNPPENNLE QVQPDQTRAE SSSQVGSGGF SVQQQVDHGG EKTLMQVPSL 300 DFDQF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027937305.1	0.0	trihelix transcription factor GTL2-like
TrEMBL	A0A4D6N2B4	0.0	A0A4D6N2B4_VIGUN; Uncharacterized protein
STRING	XP_007144820.1	1e-177	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	6e-41	Trihelix family protein