PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002211
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 315aa    MW: 35086.9 Da    PI: 7.3072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45942535PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-34366PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171967148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d++ q+G+g +W + ++++g++R++k+c++rw++yl
        Vun002211 19 KGPWSPEEDAKLKDYIDQHGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 67
                     79*********************************************97 PP
2Myb_DNA-binding36.41.2e-1174116246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  Ed+++  + +  G++ W+ Ia+ ++ gRt++++k++w++
        Vun002211  74 GQFSDAEDKIICSLLASIGSR-WSIIASQLP-GRTDNDIKNYWNT 116
                      7899*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.4641471IPR017930Myb domain
SuperFamilySSF466894.08E-2616114IPR009057Homeodomain-like
SMARTSM007171.1E-121869IPR001005SANT/Myb domain
PfamPF002497.5E-161967IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-242074IPR009057Homeodomain-like
CDDcd001672.16E-92167No hitNo description
PROSITE profilePS5129416.11272122IPR017930Myb domain
SMARTSM007171.7E-1072120IPR001005SANT/Myb domain
PfamPF002491.5E-1074116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2375122IPR009057Homeodomain-like
CDDcd001671.84E-776118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
XRETSMGRAP CCDKANVKKG PWSPEEDAKL KDYIDQHGTG GNWIALPQKV GLKRCGKSCR  60
LRWLNYLRPN IKHGQFSDAE DKIICSLLAS IGSRWSIIAS QLPGRTDNDI KNYWNTKLKK  120
KMMAMNASPQ KKPLQITLLS ILESSTPSSS PLSFRDTTNS YYHPHASFTG VASFSYSSAS  180
ADSFFQAQES FMDPTQKCQF KDSTNNTMFV FGGEATATSC SSSDASCNNQ ISQIMEPEFG  240
EASFVEQIGV AADNPLYSGG SASVSGWTDK QNGLWEQNPL DYYGLEEIKQ LISTNNSFNN  300
FLFDDKKTQE RVTYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23191227108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027914313.10.0transcription factor RAX2-like
TrEMBLA0A4D6MC210.0A0A4D6MC21_VIGUN; Myb proto-oncogene protein
STRINGXP_007162775.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36