PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002193
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 316aa    MW: 34682.7 Da    PI: 7.1423
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45887058PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-27636PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.8e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l + ++++G+g +W + +++ g++R++k+c++rw++yl
        Vun002193 14 KGPWSPEEDEKLREFIEKHGTGgNWISLPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding35.52.3e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++Ed ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
        Vun002193  69 GEFSEDEDRIICTLFGSIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.159966IPR017930Myb domain
SuperFamilySSF466898.79E-2811109IPR009057Homeodomain-like
SMARTSM007171.9E-131364IPR001005SANT/Myb domain
PfamPF002493.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-241569IPR009057Homeodomain-like
CDDcd001673.41E-101662No hitNo description
SMARTSM007172.0E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129416.41267117IPR017930Myb domain
PfamPF002493.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDEKLREFIE KHGTGGNWIS LPHKAGLKRC GKSCRLRWLN  60
YLRPNLKHGE FSEDEDRIIC TLFGSIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKMMGI  120
VNPSALKKPH QVTTLSSMLQ NSTPSSSSSS SSLSLKSNHS SNHQPHVAFT GSETISYESL  180
LSGNSCSTFE NLYQVNCGFM LGGETSCSSS SDGSCNNNNN NQMNHVKGAE LGYVGVGGFG  240
DQIGGLSYLS SEVEDTQKLV CSNGGRTSGW TGEESKLWGE SPLEYGLEEI KQLISTSSCN  300
NFMFDDSKTG EMVMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027933916.10.0transcription factor RAX2
TrEMBLA0A4D6MX030.0A0A4D6MX03_VIGUN; Myb proto-oncogene protein
STRINGXP_007144336.11e-172(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-74myb domain protein 36