PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun002193 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||||||
Protein Properties | Length: 316aa MW: 34682.7 Da PI: 7.1423 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l + ++++G+g +W + +++ g++R++k+c++rw++yl Vun002193 14 KGPWSPEEDEKLREFIEKHGTGgNWISLPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 35.5 | 2.3e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ Vun002193 69 GEFSEDEDRIICTLFGSIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.159 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.79E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.41E-10 | 16 | 62 | No hit | No description |
SMART | SM00717 | 2.0E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.412 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.7E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDEKLREFIE KHGTGGNWIS LPHKAGLKRC GKSCRLRWLN 60 YLRPNLKHGE FSEDEDRIIC TLFGSIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKMMGI 120 VNPSALKKPH QVTTLSSMLQ NSTPSSSSSS SSLSLKSNHS SNHQPHVAFT GSETISYESL 180 LSGNSCSTFE NLYQVNCGFM LGGETSCSSS SDGSCNNNNN NQMNHVKGAE LGYVGVGGFG 240 DQIGGLSYLS SEVEDTQKLV CSNGGRTSGW TGEESKLWGE SPLEYGLEEI KQLISTSSCN 300 NFMFDDSKTG EMVMYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027933916.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | A0A4D6MX03 | 0.0 | A0A4D6MX03_VIGUN; Myb proto-oncogene protein | ||||
STRING | XP_007144336.1 | 1e-172 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 5e-74 | myb domain protein 36 |