PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002177
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 317aa    MW: 36496.3 Da    PI: 6.6475
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45915333PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-21732PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll +++  +G g+W++ a++ g++Rt+k+c++rw++yl
        Vun002177 22 RGPWTLEEDNLLSQYISDHGEGRWNLLAKRSGLKRTGKSCRLRWLNYL 69
                     89********************************************97 PP
2Myb_DNA-binding52.61.1e-1675118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
        Vun002177  75 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.8011769IPR017930Myb domain
SuperFamilySSF466893.92E-3020116IPR009057Homeodomain-like
SMARTSM007177.9E-162171IPR001005SANT/Myb domain
PfamPF002495.2E-162269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-232376IPR009057Homeodomain-like
CDDcd001671.92E-112469No hitNo description
PROSITE profilePS5129425.69770124IPR017930Myb domain
SMARTSM007173.5E-1574122IPR001005SANT/Myb domain
PfamPF002491.3E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2377123IPR009057Homeodomain-like
CDDcd001673.57E-1179118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
XIAISTSKSV SSSSEDDNEL RRGPWTLEED NLLSQYISDH GEGRWNLLAK RSGLKRTGKS  60
CRLRWLNYLK PDVKRGNLTP QEQLLILELH SKWGNRWSKI AQHLPGRTDN EIKNYWRTRI  120
QKQARHLKIE TDSREFQELV RRFWMPRLLQ KVKESSCSSA MSIQNQEIPL VLDDGVSQHS  180
TVGTIPWQGP CVSVNEGSPT YMDQHEQNSD SEHNSGSCIS FSESANIPKV SHHFAHTMDQ  240
FHALSSNDFG TYSYEGYHVN DNAYEIETFK PASARVAQDV QYQIADSQTP PTDWLSNDFA  300
CSMWNIDELW QFSKLQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25191244108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027917669.10.0transcription factor MYB62-like
TrEMBLA0A4D6L9V20.0A0A4D6L9V2_VIGUN; Myb proto-oncogene protein
STRINGXP_007160381.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-80myb domain protein 62