PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002156
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family E2F/DP
Protein Properties Length: 318aa    MW: 35320.3 Da    PI: 5.0167
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45818862PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-1939PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.41.6e-2574158271
    E2F_TDP   2 keksLrlltqkflklleksee.givtlne..vakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                ++++Lr++++k   ++ek+e+ g++t+ne  va+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Vun002156  74 SGRGLRQFSMK---VCEKVENrGRTTYNEvxVADELVAEfsdpinseltpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 158
                689********...******99******94459**********************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094044.8E-1247317IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.6E-4369164IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.7E-3173158IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.2E-2375158IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.14E-1876159IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.19E-43163266IPR014889Transcription factor DP, C-terminal
SMARTSM011383.4E-67165318IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.48E-43165279No hitNo description
PfamPF087815.6E-42166279IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MADEDDDEVL GCATATTTTA SGQSASTNSL PPPADNTLLK LNHLDLHADD AGSQASLAGK  60
KKKRGQRAVG PDKSGRGLRQ FSMKVCEKVE NRGRTTYNEV XVADELVAEF SDPINSELTP  120
DQQQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP RTSVNDIEEI KTERLALRNR  180
IEKKTAYLQE LEEQFVGLQN LIQRNEQLYS SGNPPSGGVS LPFILVQTRP HATVEVEISE  240
DMQLVHFDFN STPFELHDDN YVLKAMKFCE RPQQDNMTHN FTAGGEGSSM SGLCQPQTPS  300
TNLKVSNRPP TSPPLPGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3267163193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027908875.10.0transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-145DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A4D6LJI00.0A0A4D6LJI0_VIGUN; Transcription factor Dp-1
STRINGXP_007131528.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-146Transcription factor DP