PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002151
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 318aa    MW: 35574.1 Da    PI: 6.3203
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45842713PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-10048PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.2e-34191102102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+++++li+w   +nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i 
     Vun002151  19 FVIKTYNMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKHLLRNIV 106
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
     Vun002151 107 RRKH 110
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.8E-5515108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-3316108IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.0E-3716108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.3E-181942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2919108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEHNIISNTN NINNVIAPFV IKTYNMVNDP TTDKLITWGP ANNSFIVLDP LDFSHSLLPA  60
FFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEWFLRGQKH LLRNIVRRKH GGGRSSNLHL  120
HTLKLEELDD EAMVLEIAKL KEEQKALEEE LQGMNKRLET TEKRPQQMMA FLSKVVEDPQ  180
VLSRILRERE RKHLGEKKRR LIPPPSTAAT SSSSSSGIKT EFEEDEGNNI MSSSPETGLE  240
IDNNSNNIIC SPATAGYWGE QGCYGYNCGG VTTPLTVVTP AAPAMGGGYF GRGSYFGEMA  300
AEGSALPPYP FSLLEGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-251610826129Heat shock factor protein 1
5d5v_B4e-251610826129Heat shock factor protein 1
5d5v_D4e-251610826129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027925199.10.0heat stress transcription factor C-1
SwissprotQ9LV524e-85HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A4D6LU650.0A0A4D6LU65_VIGUN; Heat shock transcription factor 1
STRINGXP_007152829.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-74heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]