PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun001938

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 331aa MW: 37186.9 Da PI: 4.6789

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45902252	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-22190	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7.1e-12	164	207	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Vun001938 164 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 207 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.2E-15	161	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	164	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	164	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	165	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.57E-5	165	211	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MELSQLGFLD ELLAPRKDTW SALSTGLNEL LPSAWSFDSF DDNHGLATLN PSFAAFSTPL 60 DHRFECPYGS EATHPFVDGF SLPELDSSYT RNDESAPLLP QEDNPSLEDE EFGFLGSEKQ 120 SLEQATNGCK VEEQVTEIPV FNVGLCAEKK LKSKKLEGQP SKNLMAERRR RKRLNDRLSM 180 LRSIVPKISK MDRTSILGDT IDYMKELLER IGKLQEEEME EGTNHINLLG NSKELKPNEA 240 MVRNSPKFDV ERREHDTRIS ICCATKLGLL LSTVNTLEAL GLEIHQCVIS NFNDFSMQAT 300 CSEVAEQRNC TSPEDIKQAL FRNAGYGGRC L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	173	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027908897.1	0.0	transcription factor bHLH93-like isoform X1
Swissprot	Q9LSL1	3e-87	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A4D6LQ92	0.0	A0A4D6LQ92_VIGUN; Transcription factor MYC2
STRING	GLYMA01G02390.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	2e-89	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]