PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001892
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 335aa    MW: 37949.1 Da    PI: 5.9398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45916829PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-4600PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-173276147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
        Vun001892 32 RGRFSFEEEETIIQLHSILGNK-WSAIASRLP-GRTDNEIKNYWNTH 76
                     89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.504126IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-9229IPR009057Homeodomain-like
SuperFamilySSF466891.28E-211284IPR009057Homeodomain-like
PROSITE profilePS5129425.0872781IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-263081IPR009057Homeodomain-like
SMARTSM007171.1E-163179IPR001005SANT/Myb domain
PfamPF002491.2E-153276IPR001005SANT/Myb domain
CDDcd001671.50E-123477No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
XWRTLPKNAG LQRCGKSCRL RWTNYLRPDI KRGRFSFEEE ETIIQLHSIL GNKWSAIASR  60
LPGRTDNEIK NYWNTHIRKR LLRMGIDPVT HSPRLDLLDI SSILNASFYG SSQMLLGMQQ  120
SMVNPELLRL ASSLFSSSQQ HKHLEMCAPK GQQNQLCDPQ VQNHVPHLAQ FQDPVQEVPA  180
CSTTVFGTPC VSLPLSQPQL VEPHNVDPYP SSSFTDFTYQ QHSHDDQIIS DWHKDGVALS  240
TLTDDYVPQL SSYNYYSTSD AQNLVYPPLS EPSTFLSNNS NQKFSFASSP SPTPLNSNST  300
IINGSNTEDE RDQSYDSSSM LKFEIPDILD VNEFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-20138140108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027931556.10.0transcription factor MYB102-like
SwissprotQ9LDR81e-82MY102_ARATH; Transcription factor MYB102
TrEMBLA0A4D6KH810.0A0A4D6KH81_VIGUN; Myb proto-oncogene protein
STRINGXP_007148253.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-74MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]