PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001865
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 337aa    MW: 37514.9 Da    PI: 7.1348
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45907915PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-9123PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1172.4e-36401512111
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....kaaksaaks 97 
                 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l++++  ++   +++++++++++ ssg    +++++++++
  Vun001865  40 SGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELPPWHP--PTHDEEKQNDAAGSSGivavEQQQEEHHH 137
                689*************************************************************44444..33344444444444447888777777788 PP

        TCP  98 kksqksaasalnla 111
                +++q+s+++  n++
  Vun001865 138 HQQQQSESCGYNFQ 151
                88888888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3241144IPR005333Transcription factor, TCP
PROSITE profilePS5136932.11242100IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
XLNQATKHSK HNRGGTLTRV MRSSVGDIVQ VEGGHIVRSS GRKDRHSKVY TSKGPRDRRV  60
RLSAHTAIEF YDVQDRLGYD RPSKAVDWLI KKAKSSIDKL AELPPWHPPT HDEEKQNDAA  120
GSSGIVAVEQ QQEEHHHHQQ QQSESCGYNF QLQRQLGAFI STHVDTDPIN FQTNNSSEDL  180
GLSLHCFQDH PGLINWPSQQ GANQAPPSNE HQIQTLFAGS TPVAFENHYQ RTVTWNNEAT  240
TGDHVSRMGF FLNSHPFLGQ ASASAYAQSE TLQSSFSFPV TSSEHQRPQP VHQPSIFGSR  300
FVFDGLAGFC IPDRIQSVEE NHGVASNRPS SSPSSIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2247100154Putative transcription factor PCF6
5zkt_B5e-2247100154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027909551.10.0transcription factor TCP4-like
RefseqXP_027909552.10.0transcription factor TCP4-like
RefseqXP_027909553.10.0transcription factor TCP4-like
RefseqXP_027909554.10.0transcription factor TCP4-like
TrEMBLA0A4D6LCG40.0A0A4D6LCG4_VIGUN; Transcription factor TCP subgroup
STRINGXP_007134584.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.39e-47TCP family protein