PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001860
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 337aa    MW: 37876.3 Da    PI: 10.0138
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45811214PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-23015PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552.1e-171362155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Vun001860 13 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 62
               78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-91362IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-161370IPR016177DNA-binding domain
CDDcd000183.47E-111469No hitNo description
PROSITE profilePS5103217.821470IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-171470IPR001471AP2/ERF domain
SMARTSM003801.8E-311476IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-6105149IPR016177DNA-binding domain
CDDcd000182.60E-13105150No hitNo description
SMARTSM003802.4E-13106154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
XKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF  60
RGLDADINFN LVDYEEDLKQ MKNLSKEEFV HILRRHSTGF SRGSSKYRGV TLHKCGRWEA  120
RMGQFLGKKA YDKAAIKCNG REAVTNFEPS TYESEMKPEA INEGGNHDLD LNLGIATPGH  180
GPKENIGHLQ FQPVPFSTHP GRIPRMETNF SSVIGDPSLK RHVVTEERPS VWNPAHYTFF  240
PNMERAERIG IDPSKGVPNW MWQRHGQVTA TPVPPFSTAA SSGFSISATF PPNAIFPTKS  300
VNSIPQNLCF TSASAPGSNT PQFYYEVKST QAPYQPI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027928868.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotB8AXC38e-93AP21_ORYSI; APETALA2-like protein 1
SwissprotQ9SK036e-93RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A4D6NB080.0A0A4D6NB08_VIGUN; AP2-like factor
STRINGXP_007150248.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-94related to AP2.7