PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun001732

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 346aa MW: 37920.5 Da PI: 5.6406

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45917127	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-25216	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.2e-09	189	236	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L k +++++sLq Vun001732 189 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDKIINHVQSLQ 236 8***********************9....899999***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.01E-14	183	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.97E-9	183	240	No hit	No description
PROSITE profile	PS50888	14.462	185	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-14	186	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	189	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-8	191	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MEQTMLEAIQ FNEEIQGIIA PAPETASSFT ALLELPPTQA VELLHSPEQA GKPPRHNPKP 60 CPLTSFASAS ASAANLTFPS NAALIERAAR LSVFAGENSN SNSNSNSTEI KRELPETDSN 120 PSSTQGGGSA SDPVLENKDE KGLKRKEREK KVKASSKKEK SVVADDSSGD GEKLPYVHVR 180 VRRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TALVLDKIIN HVQSLQHEVE 240 ILSMKLAAVN PVIDFNLDSL LATEGVSPMD CNFPPTVAPV VWPEIPQNAN RQQYQQPWQF 300 DAFHHQPVWG REEDNTNFMT PENSLLSYDS SANSVSLHSN QLKMEL

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MEQTMLEAIQ FNEEIQGIIA PAPETASSFT ALLELPPTQA VELLHSPEQA GKPPRHNPKP  60
CPLTSFASAS ASAANLTFPS NAALIERAAR LSVFAGENSN SNSNSNSTEI KRELPETDSN  120
PSSTQGGGSA SDPVLENKDE KGLKRKEREK KVKASSKKEK SVVADDSSGD GEKLPYVHVR  180
VRRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TALVLDKIIN HVQSLQHEVE  240
ILSMKLAAVN PVIDFNLDSL LATEGVSPMD CNFPPTVAPV VWPEIPQNAN RQQYQQPWQF  300
DAFHHQPVWG REEDNTNFMT PENSLLSYDS SANSVSLHSN QLKMEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027937593.1	0.0	transcription factor bHLH48-like isoform X2
Swissprot	Q8VZ02	1e-85	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A4D6MX15	0.0	A0A4D6MX15_VIGUN; Phytochrome-interacting factor 3
STRING	XP_007145649.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-85	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]