PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun001709 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Trihelix | ||||||||||||
Protein Properties | Length: 347aa MW: 37748.8 Da PI: 8.9653 | ||||||||||||
Description | Trihelix family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 30 | 1.4e-09 | 12 | 54 | 43 | 86 |
trihelix 43 ferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+qle Vun001709 12 QSKSVEQCKNKVDNLKKRYKLERQRMSSG-CISTSHWPWFKQLE 54 47899***********************9.99999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.3E-9 | 12 | 56 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 6.8E-67 | 104 | 340 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 32.734 | 106 | 341 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 1.7E-56 | 107 | 340 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 3.31E-113 | 109 | 341 | No hit | No description |
Pfam | PF00696 | 9.7E-25 | 110 | 320 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
XAFVVSERCE NQSKSVEQCK NKVDNLKKRY KLERQRMSSG CISTSHWPWF KQLEQIVGNS 60 LPAKFSDEDK AVVSAGTSPR QSKRYGVATP STGQANSIRS KALTNLRWRR VVFKISGAAL 120 TGSDTCNMDP KVAMLVSREV AIASRLGVEV AIVVGGCNFF SGDAWVNATG LERCTAYQVG 180 MMATVMNSIL LQSTLEKMGV QTRVQTSIAM QEFAELYNRQ RAIRHLEKGR VIIFGGISFG 240 AGNPLFSTDI AAALRASEIN AEAVLKGTNV DGVYDCNSRD NNFTFEHISF RELGSRGITS 300 MDASALSFCK ENAIPVVVFN LLEPGNISKA LCGEQVGTLI DQTGAVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek5_B | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek5_C | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek5_D | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek5_E | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek5_F | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek6_A | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek6_B | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek6_C | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek6_D | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek6_E | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
3ek6_F | 2e-63 | 100 | 340 | 1 | 239 | Uridylate kinase |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027936963.1 | 0.0 | uncharacterized protein LOC114191776 | ||||
TrEMBL | A0A4D6MXW2 | 0.0 | A0A4D6MXW2_VIGUN; Uridylate kinase | ||||
STRING | XP_007145266.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 1e-167 | Trihelix family protein |