PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001709
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 347aa    MW: 37748.8 Da    PI: 8.9653
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45827007PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-10801PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix301.4e-0912544386
   trihelix 43 ferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+qle
  Vun001709 12 QSKSVEQCKNKVDNLKKRYKLERQRMSSG-CISTSHWPWFKQLE 54
               47899***********************9.99999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-91256No hitNo description
Gene3DG3DSA:3.40.1160.106.8E-67104340IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.734106341IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.7E-56107340IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.31E-113109341No hitNo description
PfamPF006969.7E-25110320IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
XAFVVSERCE NQSKSVEQCK NKVDNLKKRY KLERQRMSSG CISTSHWPWF KQLEQIVGNS  60
LPAKFSDEDK AVVSAGTSPR QSKRYGVATP STGQANSIRS KALTNLRWRR VVFKISGAAL  120
TGSDTCNMDP KVAMLVSREV AIASRLGVEV AIVVGGCNFF SGDAWVNATG LERCTAYQVG  180
MMATVMNSIL LQSTLEKMGV QTRVQTSIAM QEFAELYNRQ RAIRHLEKGR VIIFGGISFG  240
AGNPLFSTDI AAALRASEIN AEAVLKGTNV DGVYDCNSRD NNFTFEHISF RELGSRGITS  300
MDASALSFCK ENAIPVVVFN LLEPGNISKA LCGEQVGTLI DQTGAVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-631003401239Uridylate kinase
3ek5_B2e-631003401239Uridylate kinase
3ek5_C2e-631003401239Uridylate kinase
3ek5_D2e-631003401239Uridylate kinase
3ek5_E2e-631003401239Uridylate kinase
3ek5_F2e-631003401239Uridylate kinase
3ek6_A2e-631003401239Uridylate kinase
3ek6_B2e-631003401239Uridylate kinase
3ek6_C2e-631003401239Uridylate kinase
3ek6_D2e-631003401239Uridylate kinase
3ek6_E2e-631003401239Uridylate kinase
3ek6_F2e-631003401239Uridylate kinase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027936963.10.0uncharacterized protein LOC114191776
TrEMBLA0A4D6MXW20.0A0A4D6MXW2_VIGUN; Uridylate kinase
STRINGXP_007145266.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-167Trihelix family protein