PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 359aa    MW: 39512.1 Da    PI: 8.7373
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45817165PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-3926PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.66.5e-32501772117
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssg.... 88 
                 g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++         +++s ++++          
  Vun001560  50 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslvacNEGSGQNTNT----Lwksk 145
                689*************************************************************777775555433222223333333333....03333 PP

        TCP  89 ............kaaksaakskksqksaasalnlakesrak 117
                            +         +s+++++++ n + +++a+
  Vun001560 146 sgemvsdkanwiN---------RSEDDTNNNTNTNTDTNAN 177
                3333333333331.........3333333333333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.09752110IPR017887Transcription factor TCP subgroup
PfamPF036343.4E-2952175IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MINSTKEAGF PLKQEGVSSS DHEKAKASSS SSSQWLKLKD PRIVRVSRAF GGKDRHSKVC  60
TVRGLRDRRV RLSVPTAIHL YDLQDRLGLN QPSKVVDWLL NAAKHEIDEL PPLPIPPGNF  120
TLGYPSLVAC NEGSGQNTNT LWKSKSGEMV SDKANWINRS EDDTNNNTNT NTDTNANTAS  180
DCDNKHCHGA HVFPNNLLPR PNHPSFLGLM NTMPSLGYQW EASSGDVAQW ANHGFVNQTD  240
IHSINVVPIP SSTLALSTGN TSTPQILVCP SGATQPYFPS HVAAMEMNAR QINHYQMLTS  300
GSQNLLANSL NPSSQQLMTQ SGKVPFSLVR PKLFHSPNTT ESHHHHHHPR KDQDFPSKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1857111155Putative transcription factor PCF6
5zkt_B3e-1857111155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027923674.10.0transcription factor TCP13
RefseqXP_027923675.10.0transcription factor TCP13
RefseqXP_027923676.10.0transcription factor TCP13
TrEMBLA0A4D6LW690.0A0A4D6LW69_VIGUN; Transcription factor TCP subgroup
STRINGXP_007151337.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-38plastid transcription factor 1