PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun001560 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||||||
Protein Properties | Length: 359aa MW: 39512.1 Da PI: 8.7373 | ||||||||||||
Description | TCP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.6 | 6.5e-32 | 50 | 177 | 2 | 117 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssasnsssg.... 88 g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++s ++++ Vun001560 50 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslvacNEGSGQNTNT----Lwksk 145 689*************************************************************777775555433222223333333333....03333 PP TCP 89 ............kaaksaakskksqksaasalnlakesrak 117 + +s+++++++ n + +++a+ Vun001560 146 sgemvsdkanwiN---------RSEDDTNNNTNTNTDTNAN 177 3333333333331.........3333333333333333332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.097 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.4E-29 | 52 | 175 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MINSTKEAGF PLKQEGVSSS DHEKAKASSS SSSQWLKLKD PRIVRVSRAF GGKDRHSKVC 60 TVRGLRDRRV RLSVPTAIHL YDLQDRLGLN QPSKVVDWLL NAAKHEIDEL PPLPIPPGNF 120 TLGYPSLVAC NEGSGQNTNT LWKSKSGEMV SDKANWINRS EDDTNNNTNT NTDTNANTAS 180 DCDNKHCHGA HVFPNNLLPR PNHPSFLGLM NTMPSLGYQW EASSGDVAQW ANHGFVNQTD 240 IHSINVVPIP SSTLALSTGN TSTPQILVCP SGATQPYFPS HVAAMEMNAR QINHYQMLTS 300 GSQNLLANSL NPSSQQLMTQ SGKVPFSLVR PKLFHSPNTT ESHHHHHHPR KDQDFPSKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027923674.1 | 0.0 | transcription factor TCP13 | ||||
Refseq | XP_027923675.1 | 0.0 | transcription factor TCP13 | ||||
Refseq | XP_027923676.1 | 0.0 | transcription factor TCP13 | ||||
TrEMBL | A0A4D6LW69 | 0.0 | A0A4D6LW69_VIGUN; Transcription factor TCP subgroup | ||||
STRING | XP_007151337.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 1e-38 | plastid transcription factor 1 |