PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001499
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 364aa    MW: 41121.8 Da    PI: 5.7234
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45932495PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-8468PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-073023342254
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 +yp++e++++L +++gL+ +q+ +WF N+R +
  Vun001499 302 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 334
                59*****************************87 PP
2ELK29.12.3e-10255276122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++++++++E++
  Vun001499 255 ELKHELKQGYKEKIVDIREEIL 276
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-1891135IPR005540KNOX1
PfamPF037902.4E-1793134IPR005540KNOX1
SMARTSM012561.2E-25143198IPR005541KNOX2
PfamPF037915.7E-19147197IPR005541KNOX2
PfamPF037898.2E-7255276IPR005539ELK domain
SMARTSM011886.1E-4255276IPR005539ELK domain
PROSITE profilePS512139.969255275IPR005539ELK domain
PROSITE profilePS5007111.612275338IPR001356Homeobox domain
SuperFamilySSF466895.56E-16277341IPR009057Homeodomain-like
SMARTSM003891.2E-10277342IPR001356Homeobox domain
CDDcd000862.59E-11278339No hitNo description
Gene3DG3DSA:1.10.10.606.1E-25282339IPR009057Homeodomain-like
PfamPF059209.7E-18295334IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAFHDHMAHE ITFQPFTEDH QQMGQGRDMQ RLLPLSAGAP TWLNGSNAAT LRQQNFLHLQ  60
PESATAHPND DVRGSIDRNR TESNSEPDDL AEYKADILGH PLYDQLLSAH VSCLRIATPV  120
DQLPRIDAQL QQSQRVVDKY SGLGNGVVDD KELDQFMTHY VILLCAFKEQ LQQHVRVHAM  180
EAVMACWELE QSLQTLTGVS PGEGTGATMS DDEEDQAESN ANLYEGSMDG ADSLSFGPLV  240
PTETERSLME RVRQELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS LLKAWWQSHS  300
KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHTNP SSSSGSKSKR KSSGAGETSN  360
QSFM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027903887.10.0homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480001e-164KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A4D6NMJ80.0A0A4D6NMJ8_VIGUN; Pre-B-cell leukemia transcription factor
STRINGXP_007138444.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-160KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]