PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun001281 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARR-B | ||||||||||||
Protein Properties | Length: 383aa MW: 42051.8 Da PI: 6.0958 | ||||||||||||
Description | ARR-B family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.9 | 2.3e-28 | 205 | 258 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl Vun001281 205 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 258 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76 | 1.4e-25 | 24 | 132 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+ + +++++q+ + +y +v+++++++ al+ll+e++ +D++l D+ mp+mdG++ll++ e +lp+i++++ ++ + + + ++ Ga Vun001281 24 VLVVDDDATTLRIIEQMSIRCRY-RVTTCTEATVALNLLRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSGDSTTSAVMKGIRHGAC 118 89*********************.*******************************************6644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel++ Vun001281 119 DYLIKPVREEELRN 132 ************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.6E-146 | 4 | 362 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 8.5E-40 | 21 | 155 | No hit | No description |
SuperFamily | SSF52172 | 4.55E-34 | 21 | 145 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 4.9E-29 | 22 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.387 | 23 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 6.2E-22 | 24 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.11E-25 | 25 | 137 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-20 | 202 | 262 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.504 | 202 | 261 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-30 | 202 | 263 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-24 | 205 | 258 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 207 | 256 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MAPSRSAADA CKGGTAEFPA GLRVLVVDDD ATTLRIIEQM SIRCRYRVTT CTEATVALNL 60 LRERKGCFDV VLSDVHMPDM DGYKLLEHVG LEMDLPVIMM SGDSTTSAVM KGIRHGACDY 120 LIKPVREEEL RNIWQHVVRK IWNENKEHDN SGSMEDSDWN IRGNDDIEYT SVADEAEVVK 180 APKKRSSLKE EDIELESDDP ATSKKPRVVW SVELHQQFVS AVNQLGLDKA VPKRILELMN 240 VPGLTRENVA SHLQKFRLYL KRLSGVAQQQ NGMLNGVPGT IESKLSATGR FDIQALAAAG 300 HVPPETLAAL HAELLGRPAT NIMSTADQAT LLQASIGLKH SHAEHAVAYG QPFVKCPSNI 360 GKDFPPSFLT ANDVSTGYGA WPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-22 | 203 | 264 | 3 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027914131.1 | 0.0 | two-component response regulator ORR21-like | ||||
Swissprot | Q8H7S7 | 1e-142 | ORR21_ORYSJ; Two-component response regulator ORR21 | ||||
TrEMBL | A0A4D6LL83 | 0.0 | A0A4D6LL83_VIGUN; Two-component response regulator ARR-B family | ||||
STRING | GLYMA02G09451.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-117 | response regulator 2 |
Publications ? help Back to Top | |||
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