PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001223
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 390aa    MW: 42744.5 Da    PI: 7.6816
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45824576PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-6032PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed++l+ +++++G+g+W+t +++ g+ R++k+c++rw++yl
        Vun001223 14 KGAWTVQEDQKLIAYIHKHGTGSWRTLPQKAGLQRCGKSCRLRWFNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.52.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+++++++ + lG++ W++Ia++++  Rt++++k++w++yl
        Vun001223  67 RGKLSPEEEQKIIKLQAVLGNR-WSSIAKHLP-MRTDNEIKNYWNSYL 112
                      7999******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-23564IPR009057Homeodomain-like
PROSITE profilePS5129418.236961IPR017930Myb domain
SuperFamilySSF466894.4E-2812108IPR009057Homeodomain-like
SMARTSM007171.5E-121363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
CDDcd001678.22E-111661No hitNo description
PROSITE profilePS5129425.57562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2465115IPR009057Homeodomain-like
SMARTSM007174.1E-1566114IPR001005SANT/Myb domain
PfamPF002493.2E-1567112IPR001005SANT/Myb domain
CDDcd001671.25E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRTPCCSHE ELRKGAWTVQ EDQKLIAYIH KHGTGSWRTL PQKAGLQRCG KSCRLRWFNY  60
LRPDIKRGKL SPEEEQKIIK LQAVLGNRWS SIAKHLPMRT DNEIKNYWNS YLKRHYEKND  120
VDPSGSKPIS TASSTESKSS DLCKVPPKET DCHGPNATTH QSNQSNIPKT MSSSTQLLNR  180
VASKILSSGY LEAIKSYKHV VGGNTNSDSV VKTGIGVEKE GNREPLVANN SVTSSAQLLN  240
KMATSLPHKV HGLESAKAVF SKLLESSEKG DSGSDGSFIS SDEIGECLNA LSPFEDGPHI  300
TNVVGSPSSP SLIFNQVTTP SCFSDNEDNW QSVSSNYVSF RHCAPPTAAQ CTVSELNLGE  360
SSGSTSCFLF ENADLGTCDD EISKYIQYLX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28111144106B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027902608.10.0transcription factor MYB34-like
TrEMBLA0A4D6NLV10.0A0A4D6NLV1_VIGUN; Myb proto-oncogene protein
STRINGXP_007134825.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.13e-62myb domain protein 34