PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Vun000373 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||||||||||
Protein Properties | Length: 172aa MW: 19886.7 Da PI: 8.9976 | ||||||||||||||||
Description | MYB family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.5e-16 | 11 | 57 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+W+ +Ed++l ++v++ G g+W+ +++ g++R++++ck+rw++yl Vun000373 11 GAWSSDEDQILFNYVQLTGEGNWTDLPQRAGLKRCGENCKHRWLNYL 57 79*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.3 | 8.5e-14 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r +++ +E+el+++++k+lG++ W Ia +++ gR++ ++k++w++yl Vun000373 63 RENFSWDEQELIIRLHKLLGNR-WCMIAGRLP-GRSEDEIKNYWNTYL 108 789*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.562 | 1 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-18 | 9 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-10 | 9 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.13E-26 | 10 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.3E-14 | 11 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-7 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 21.377 | 58 | 112 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 61 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-13 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-12 | 63 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.66E-10 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
METNNCCEKQ GAWSSDEDQI LFNYVQLTGE GNWTDLPQRA GLKRCGENCK HRWLNYLKPT 60 IPRENFSWDE QELIIRLHKL LGNRWCMIAG RLPGRSEDEI KNYWNTYLSK KVEEEKKVGS 120 RSVKSRSMSS VESPWFSQND LAMNSMDSPN PVIVRPKVVR LAKAVLPRLV GS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-22 | 10 | 112 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027902655.1 | 1e-126 | transcription factor MYB3-like | ||||
Swissprot | Q9S9K9 | 7e-45 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A4D6NIG3 | 1e-124 | A0A4D6NIG3_VIGUN; Myb proto-oncogene protein | ||||
STRING | XP_007138671.1 | 2e-91 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 3e-44 | myb domain protein 3 |