PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Vun000363 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||||||||||
Protein Properties | Length: 184aa MW: 19264.9 Da PI: 10.0698 | ||||||||||||||||
Description | C3H family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.5e-09 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ f Ck+Gd+C+FaHg+ Vun000363 101 KTRICNKFNTAEGCKFGDKCHFAHGE 126 8***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.042 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 35 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-8 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-4 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-14 | 99 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDTRKRGRLK LSFNSNGGFK KSKQEMESLS TGVGSKSKPC TKFFSTSGCP FGEGCHFLHY 60 VPGGYNAVAH IMNLTPAAPP ASRNVAALPP VPNGSAPAAV KTRICNKFNT AEGCKFGDKC 120 HFAHGEWELG KQIAPSFDDH RALGPTAAGR FGGRMEPSPG PATSFGSHAT AKISVEASLA 180 GAII |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027940285.1 | 1e-132 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 2e-55 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A4D6M813 | 1e-131 | A0A4D6M813_VIGUN; Far upstream element-binding protein | ||||
STRING | XP_007162316.1 | 1e-127 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 4e-41 | C3H family protein |