PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun000261
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 302aa    MW: 34171.9 Da    PI: 8.6067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45841423PU_unrefUnigeneView CDS
gnl|UG|Vun#S45910136PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-22463PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13100151155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r +h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Vun000261 100 QRITHITVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 151
                799***************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.54E-1298155No hitNo description
SuperFamilySSF474593.66E-1698169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.58999150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-13101166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALETLPSNE FSNFIVYDTI SATPFSSHDS SETSFLESFV NCQEHNPSLN DSSMRTRKRQ  60
ASEPPEAIGS RKQNVAGVQG RKKRRRRPRV CKNKEEAETQ RITHITVERN RRKQMNEHLA  120
VLRSLMPESY VQRGDQASIV GGAIEFVKEL EHLLQTLEAR KLQLLQQEAV QTNENTAISK  180
LMQPPFAQFF LYPQYTWSQS PNKYTSKTKA AIADIEVTLI ETHANLRILT RKSPVQLTKL  240
VSGFQTLYLT VLHLNVTTID PLVFYSISAK VEEGFQLGSV DGIASAVHHL LARIEDEALL  300
CC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RKKRRRR
28186KKRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027921858.10.0transcription factor bHLH71-like
SwissprotQ9C7T48e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A4D6KY240.0A0A4D6KY24_VIGUN; Transcription factor MYC2
STRINGXP_007156419.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]