PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Vun000261 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||||||||||
Protein Properties | Length: 302aa MW: 34171.9 Da PI: 8.6067 | ||||||||||||||||
Description | bHLH family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.7 | 2.1e-13 | 100 | 151 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h +Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ Vun000261 100 QRITHITVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 151 799***************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.54E-12 | 98 | 155 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-16 | 98 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.589 | 99 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 100 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-13 | 101 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-9 | 105 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MALETLPSNE FSNFIVYDTI SATPFSSHDS SETSFLESFV NCQEHNPSLN DSSMRTRKRQ 60 ASEPPEAIGS RKQNVAGVQG RKKRRRRPRV CKNKEEAETQ RITHITVERN RRKQMNEHLA 120 VLRSLMPESY VQRGDQASIV GGAIEFVKEL EHLLQTLEAR KLQLLQQEAV QTNENTAISK 180 LMQPPFAQFF LYPQYTWSQS PNKYTSKTKA AIADIEVTLI ETHANLRILT RKSPVQLTKL 240 VSGFQTLYLT VLHLNVTTID PLVFYSISAK VEEGFQLGSV DGIASAVHHL LARIEDEALL 300 CC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 86 | RKKRRRR |
2 | 81 | 86 | KKRRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027921858.1 | 0.0 | transcription factor bHLH71-like | ||||
Swissprot | Q9C7T4 | 8e-71 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A4D6KY24 | 0.0 | A0A4D6KY24_VIGUN; Transcription factor MYC2 | ||||
STRING | XP_007156419.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-73 | bHLH family protein |
Publications ? help Back to Top | |||
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