PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g13400.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 285aa    MW: 31877.3 Da    PI: 8.8318
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g13400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.7e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++l+d+v+ +G g+W++++++ g+ R++k+c++rw +yl
  Vradi11g13400.1 14 KGPWTPDEDKKLLDYVRNYGHGNWRSVPAKAGLQRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.23e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eEd  +++++++lG++ W+ Ia++++  Rt++++k++w++
  Vradi11g13400.1  67 RGNFSAEEDHTIIQLHALLGNK-WSIIAAHLP-QRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.643961IPR017930Myb domain
SuperFamilySSF466894.67E-3211108IPR009057Homeodomain-like
SMARTSM007173.9E-141363IPR001005SANT/Myb domain
PfamPF002491.5E-171461IPR001005SANT/Myb domain
CDDcd001677.04E-121661No hitNo description
PROSITE profilePS5129425.20662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2665117IPR009057Homeodomain-like
SMARTSM007177.6E-1466114IPR001005SANT/Myb domain
PfamPF002493.5E-1567110IPR001005SANT/Myb domain
CDDcd001679.93E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRVACCEKV GLKKGPWTPD EDKKLLDYVR NYGHGNWRSV PAKAGLQRCG KSCRLRWINY  60
LKPDIKRGNF SAEEDHTIIQ LHALLGNKWS IIAAHLPQRT DNEIKNYWNT NIKKRLIRMG  120
LDPITHKKIE NNTFEPFGGC HEYPKDNINI CHVAQWEGAR LEAEARGSKL QVGSGSSQLS  180
GLILSKIPTQ PCLSSHSVST KNNTAYNMYA LVLATNHDFR SSVSTLTIPT LPAVSNIPQI  240
TNTEKVMKGY VSNLQDDDIM VALEAFRTAR SESIEDLFDE PTSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g13400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519831.10.0transcription factor MYB106-like
SwissprotQ9LE638e-81MY106_ARATH; Transcription factor MYB106
TrEMBLA0A1S3VN770.0A0A1S3VN77_VIGRR; transcription factor MYB106-like
STRINGXP_007153565.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-81myb domain protein 16