PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi11g13380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 285aa MW: 31907.4 Da PI: 8.8318 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.7e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+d+v+ +G g+W++++++ g+ R++k+c++rw +yl Vradi11g13380.1 14 KGPWTPDEDKKLLDYVRNYGHGNWRSVPAKAGLQRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 3e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eEd +++++++lG++ W+ Ia++++ Rt++++k++w++ Vradi11g13380.1 67 RGNFSAEEDHTIIQLHALLGNK-WSIIAAHLP-QRTDNEIKNYWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.643 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.20E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.206 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence Send to blast |
MGRVACCEKV GLKKGPWTPD EDKKLLDYVR NYGHGNWRSV PAKAGLQRCG KSCRLRWINY 60 LKPDIKRGNF SAEEDHTIIQ LHALLGNKWS IIAAHLPQRT DNEIKNYWNT NIKKRLIRMG 120 LDPITHKKIE NNTFEPFGGC HEYPKDNINI CHVAQWEGAR LEAEARGSKL QVGSGSSQLS 180 GLILRKIPTQ PCLSSHSVST KNNTAYNMYA LVLATNHDFR SSVSTLTIPT LPAVSNISQI 240 TNTEKVLKGY VSNLQDDDIM VALEAFMTAR SESIEELFDE PTSI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi11g13380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519828.1 | 0.0 | transcription factor MYB106-like isoform X1 | ||||
Refseq | XP_022631278.1 | 0.0 | transcription factor MYB106-like isoform X1 | ||||
Swissprot | Q9LE63 | 9e-81 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A1S3VN70 | 0.0 | A0A1S3VN70_VIGRR; transcription factor MYB106-like isoform X1 | ||||
STRING | XP_007153565.1 | 1e-166 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13536 | 8 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15310.1 | 7e-82 | myb domain protein 16 |