PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g12950.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 174aa    MW: 19904.3 Da    PI: 7.4796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g12950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-0578100123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk+F  + + ++H +++
  Vradi11g12950.1  78 FGCRKCGKPFAVRGDWRTHEKNC 100
                      56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.48E-66398No hitNo description
Gene3DG3DSA:3.30.160.604.2E-56498IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MFNRFNNMQM HMWGHGSQYR KGPESLRGAK PASSMLRLPC YCCAEGCKNN IDHPRSRPLK  60
DFRTLQTHYK RKHGAKPFGC RKCGKPFAVR GDWRTHEKNC GKLWFCICGS DFKHKRSLKD  120
HVRAFGDGHA PHTVESCDQI GEDDLFGDED EEELDLEDDD EGYNSNEVGF GFN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g12950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022631430.11e-129zinc finger protein WIP6
SwissprotQ9FX681e-88ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A3Q0EI991e-128A0A3Q0EI99_VIGRR; zinc finger protein WIP6
STRINGXP_007153349.11e-111(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.13e-90C2H2-like zinc finger protein