PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g12820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 460aa    MW: 51220.6 Da    PI: 6.2391
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g12820.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.3e-10173213343
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 
                      + k  rr+++NReAA++sR+RKka++++Le+   +L +  +
  Vradi11g12820.1 173 DQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRVKLVQLEQ 213
                      56889*************************86655555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-7163217No hitNo description
SMARTSM003382.8E-6171234IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.117173217IPR004827Basic-leucine zipper domain
PfamPF001701.6E-7174214IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-6175218No hitNo description
CDDcd147081.61E-21175227No hitNo description
PROSITE patternPS000360178193IPR004827Basic-leucine zipper domain
PfamPF141441.4E-24258332IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MKETSNGEEI EMVIEQCETV PQGNDGNRNP TTGFCDFGDL HHSSAVFHQE AGVDLGSSSM  60
FSVKSSNVVG GSNMQYGTLS TNVGSSEIGS SGGGCMDTGL QLMYHKGVSM QTLPLGNGHV  120
DNWADSGIVD NSQQTDDTST DIDTDDRIQC NRVKNGSRML MQSKDQTKVK PEDQKTLRRL  180
AQNREAAKKS RLRKKAYVQQ LENSRVKLVQ LEQELQRARQ QGIFIATEGN QGHSAVGNGA  240
LAFDMEYAHW VDEHQHLLND LRLAVNSQMS DDELHILVEG VRVHHNELFR LKRIGAKADI  300
FHILNGTWKT PVERRFMWLG GFRSSELLKI IKNHLEPLTE QQLLGICNLE KSSVQSEDAL  360
DKGMEALQQY LVETLSSNSL GPTGNGNVAD YMDQMALAMA KLGELEGLLQ QADLLKQHYL  420
QQLQRILTVR QTARAFLVQN DFISRLRALS SLWLARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g12820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-136AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022631313.10.0transcription factor TGA2.2
SwissprotQ415581e-149HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A3Q0EGT70.0A0A3Q0EGT7_VIGRR; transcription factor TGA2.2
STRINGXP_007153359.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60223149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-119bZIP family protein