PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g12820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 460aa MW: 51220.6 Da PI: 6.2391 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.7 | 3.3e-10 | 173 | 213 | 3 | 43 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + k rr+++NReAA++sR+RKka++++Le+ +L + + Vradi11g12820.1 173 DQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRVKLVQLEQ 213 56889*************************86655555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-7 | 163 | 217 | No hit | No description |
SMART | SM00338 | 2.8E-6 | 171 | 234 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.117 | 173 | 217 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-7 | 174 | 214 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.88E-6 | 175 | 218 | No hit | No description |
CDD | cd14708 | 1.61E-21 | 175 | 227 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 178 | 193 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.4E-24 | 258 | 332 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MKETSNGEEI EMVIEQCETV PQGNDGNRNP TTGFCDFGDL HHSSAVFHQE AGVDLGSSSM 60 FSVKSSNVVG GSNMQYGTLS TNVGSSEIGS SGGGCMDTGL QLMYHKGVSM QTLPLGNGHV 120 DNWADSGIVD NSQQTDDTST DIDTDDRIQC NRVKNGSRML MQSKDQTKVK PEDQKTLRRL 180 AQNREAAKKS RLRKKAYVQQ LENSRVKLVQ LEQELQRARQ QGIFIATEGN QGHSAVGNGA 240 LAFDMEYAHW VDEHQHLLND LRLAVNSQMS DDELHILVEG VRVHHNELFR LKRIGAKADI 300 FHILNGTWKT PVERRFMWLG GFRSSELLKI IKNHLEPLTE QQLLGICNLE KSSVQSEDAL 360 DKGMEALQQY LVETLSSNSL GPTGNGNVAD YMDQMALAMA KLGELEGLLQ QADLLKQHYL 420 QQLQRILTVR QTARAFLVQN DFISRLRALS SLWLARPRE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g12820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-136 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022631313.1 | 0.0 | transcription factor TGA2.2 | ||||
Swissprot | Q41558 | 1e-149 | HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment) | ||||
TrEMBL | A0A3Q0EGT7 | 0.0 | A0A3Q0EGT7_VIGRR; transcription factor TGA2.2 | ||||
STRING | XP_007153359.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6022 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 1e-119 | bZIP family protein |