PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g12280.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bZIP

Protein Properties

Length: 197aa MW: 22601.4 Da PI: 6.1154

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g12280.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.2	5e-15	84	141	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ rr+++NRe+ArrsR RK++ ++eL v L +eN+ L+++l+++++ +++ +e Vradi11g12280.1 84 RKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHMSESHDRVLQE 141 688***************************************9999999888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.1E-15	80	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.852	82	145	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.64E-13	84	134	No hit	No description
Pfam	PF00170	5.8E-13	84	142	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-12	84	157	No hit	No description
CDD	cd14702	8.81E-21	85	136	No hit	No description
PROSITE pattern	PS00036	0	87	102	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MVPSEIRGVQ YLAPENPFLV PPNFGLVQTD INPNLHLNTL LSNFPNCHFP HSGLEFLAPP 60 SSYLSSNSTS DEADEIHFNI IDERKHRRMI SNRESARRSR MRKQKHLDEL WSQVVRLRTE 120 NHNLIDKLNH MSESHDRVLQ ENTRLKQEAS DLRQMLADMQ IGTSFACAME ELEDLPCNKP 180 DPSNQSITPA DMIHHE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	103	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g12280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014520315.1	1e-144	basic leucine zipper 43
Swissprot	Q9FMC2	2e-36	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A1S3VPV2	1e-143	A0A1S3VPV2_VIGRR; basic leucine zipper 43
STRING	XP_007157937.1	1e-125	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1604	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	1e-43	basic leucine-zipper 42

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]