PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g11980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 416aa MW: 46733.9 Da PI: 4.801 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.2 | 8.3e-33 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk....sgy 82 lp+G++F+P+d+e++++ L+k veg+k ++++ + ++e +i++++P++Lp +k++ + +fF+++ k+y+tg+rk+r +t+ +++ Vradi11g11980.1 58 LPKGVKFDPSDQEIIWHLLAKVgVEGSKphpfIDEFITsLEEDdGICYTHPKSLP-GIKQDGSASFFFHRAIKAYNTGNRKRRkITSqdfgDAR 150 799************888887655665577664443443666546**********.778888999******************54445665788 PP NAM 83 WkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 W++tgk+k+++ +g+++g kk++v+y++ k ekt+Wvmhey+l Vradi11g11980.1 151 WHKTGKTKPIVL-GGTQKGWKKIMVLYENniGGGKDEKTNWVMHEYHL 197 ************.999***********7622345557*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-37 | 44 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.894 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-16 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MAGPSWLVDK SRIATKIKCA SGTCDPEKII WSSNPTKPCP NCHHDIDNSD VAQEWPGLPK 60 GVKFDPSDQE IIWHLLAKVG VEGSKPHPFI DEFITSLEED DGICYTHPKS LPGIKQDGSA 120 SFFFHRAIKA YNTGNRKRRK ITSQDFGDAR WHKTGKTKPI VLGGTQKGWK KIMVLYENNI 180 GGGKDEKTNW VMHEYHLGAK EDENDGEYIF SKVFYQQQVK LGDKDDQDVT EATESTIVKV 240 VPNTPQLVTL DPPCNKRHCA NLDQEQETHS LQLSQMDCLH EIQDDCQELA TESQNEGVEN 300 KESNAEEGSK WWDSQSQNML DSQQLVEALS LCDDLLYSQS PSRDGKNEDH KNQPGLSVYA 360 QLGPECLKKD IEECQNLVHD PANIVNDNPS EIRLSQLEFS SQDSFISWGY NKAVN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g11980.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519893.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-155 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1S3VND4 | 0.0 | A0A1S3VND4_VIGRR; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
STRING | XP_007153341.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-157 | NAC family protein |