PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g11680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 25960.8 Da PI: 7.6669 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00043 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Vradi11g11680.1 83 FSCNYCRRKFFSSQALGGHQNAH 105 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.99E-6 | 81 | 111 | No hit | No description |
PROSITE profile | PS50157 | 11.302 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MELHIATSKL DKRSGSSVYA SQDYLDNSSS SCLTKTDPDS GSLSLDLTLK FNHSDEEFKG 60 ESHTNSEVGG ETHPSALAVP RVFSCNYCRR KFFSSQALGG HQNAHKRERT MAKRALRMGI 120 LTERYTSLAS LPLHGSSCRS LGLEAHASIH QGQVQSVRVP EIGVGAKFEK DYFRTPIFVE 180 DDDDGLFWPG SFRKTEGRGG FGVNLRHDAD AFNSSTRFVA TAAPAQTSAT PDLTLRL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g11680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520262.1 | 1e-161 | zinc finger protein 7 | ||||
Refseq | XP_014520263.1 | 1e-161 | zinc finger protein 7 | ||||
TrEMBL | A0A1S3VPE2 | 1e-160 | A0A1S3VPE2_VIGRR; zinc finger protein 7 | ||||
STRING | XP_007153194.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 3e-35 | zinc finger protein 4 |