PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi11g11190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 249aa MW: 28296.9 Da PI: 5.303 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 55.8 | 1e-17 | 161 | 221 | 1 | 61 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 e e++rer++q+NRe+ArrsR RK+ e+eeL +k++ L+ eN++L ++l++l++e+ + + Vradi11g11190.1 161 EDEIRRERKRQSNRESARRSRMRKERECEELHKKMEILKDENSMLTQRLKSLSEECLEICN 221 6799****************************************************87655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.1E-14 | 157 | 217 | No hit | No description |
Pfam | PF00170 | 2.6E-15 | 161 | 218 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 3.6E-16 | 161 | 225 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.829 | 163 | 215 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.06E-10 | 164 | 219 | No hit | No description |
CDD | cd14702 | 1.88E-15 | 166 | 216 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 168 | 183 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MDETLSSIIC QCQFEWANST VLQSNVLQDP MKLSNKPTVS EDAVLAFSEI VHRTFGEQNL 60 NSIKKCARNL QPKSLIPKES RGDGSKSSIL KNNKDRVLCS EAYGNKGSLH EDLVTANDFP 120 STKKQHCNLV LENASSIQLN QDLETGLDAI GTNTELVKLE EDEIRRERKR QSNRESARRS 180 RMRKERECEE LHKKMEILKD ENSMLTQRLK SLSEECLEIC NENDAIEEEL VNMYGTESIS 240 YLLAMKPR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 177 | 184 | RRSRMRKE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi11g11190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 2e-83 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520623.1 | 1e-167 | G-box-binding factor 1 isoform X1 | ||||
Refseq | XP_014520624.1 | 1e-167 | G-box-binding factor 1 isoform X1 | ||||
TrEMBL | A0A1S3VQG0 | 1e-166 | A0A1S3VQG0_VIGRR; G-box-binding factor 1 isoform X1 | ||||
STRING | GLYMA20G01030.1 | 1e-126 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14940 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36730.2 | 3e-21 | G-box binding factor 1 |