PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g11070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 558aa    MW: 60592.4 Da    PI: 9.6621
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g11070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.9e-0580102123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ C+k F r  nL+ H r H
  Vradi11g11070.1  80 FICEVCNKGFQREQNLQLHRRGH 102
                      89*******************88 PP

2zf-C2H211.90.00067156178123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Vradi11g11070.1 156 WKCDKCSKKYAVQSDWKAHSKTC 178
                      58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-779102No hitNo description
Gene3DG3DSA:3.30.160.606.2E-679102IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9980102IPR007087Zinc finger, C2H2
PfamPF121712.7E-580102IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.005280102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM00355130121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.2E-5144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.5E-7151176No hitNo description
SMARTSM00355150156176IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MTSGSSSTPF LGVRQQNQTQ LSQQHQSSTA ASSSTTTTTS TTTTPSTMPQ KKRRNQPGTP  60
YPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSNKEPKRKV  120
YLCPEPTCVH HDPSRALGDL TGIKKHYSRK HGEKKWKCDK CSKKYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAHE SARHPSNLNP LGAHHLYGTN HMSLGLGAQL  240
QNQAASANSL LSLGTAQKFE HLISPNLHHS SSFGVQSPPH SSFFMTDPNQ AFQDLQSHQQ  300
GPLFSTKQLH GLMQLPDLQG TTNNNSTSAS SLSASANNAN LFNLSFFPNT NTSGSIINDQ  360
FSNISGGNDQ GTTTFYSSSS PVSNQVGSGL SSLFGNSSLQ QDSMSPHMSA TALLQKAAQM  420
GSTTTTNGPC SLLRGTEELG IRSRMESEHS NHLRGLMNSF ANGNASMFGN VKGNENNLGQ  480
FHSVSEEPKK MSQNLGLCFG GSDKLTLDFL GVGGMVRNMN SGGFSQREQQ HSMGTMSPLD  540
PKLESAQGNQ HFGASTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35152216367Zinc finger protein JACKDAW
5b3h_F3e-35152216367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g11070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521036.10.0protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-132IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A1S3VRM20.0A0A1S3VRM2_VIGRR; protein indeterminate-domain 5, chloroplastic-like
STRINGXP_007153117.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-105indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]