PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g10600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Whirly | ||||||||
Protein Properties | Length: 200aa MW: 22397 Da PI: 9.8458 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 43.1 | 8.2e-14 | 75 | 132 | 1 | 56 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerk..ydWekkqsfa 56 svy +k+ l++ ++ p+fe+ +sg++ ++r+G +ll++a+++++ + ydW++kq+ Vradi11g10600.1 75 SVYTAKGVLTLTPKPPEFESKASGAFGVSREGYMLLQFAPSVGTEEsiYDWNQKQVVQ 132 79***************************************9865444*******875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 4.6E-19 | 65 | 131 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.2E-12 | 68 | 131 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.2E-15 | 76 | 135 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MFHIVHSLPL KHLSLPFHSF VPPKFIVPLN RNFSFIFPTS LSVRCNHSNI VEPFPPLPQY 60 PSVAELPQRV YADYSVYTAK GVLTLTPKPP EFESKASGAF GVSREGYMLL QFAPSVGTEE 120 SIYDWNQKQV VQDSYVFALQ MYKCVVDISL SGCLGATLGI GWEVMIRVEK EKKGRREVRP 180 NGIDHKGRTV GGRVKQAKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 1e-15 | 66 | 130 | 5 | 67 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 1e-15 | 66 | 130 | 5 | 67 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 1e-15 | 66 | 130 | 5 | 67 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 1e-15 | 66 | 130 | 5 | 67 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g10600.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 3e-85 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521214.1 | 4e-93 | single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A1S3VT17 | 9e-92 | A0A1S3VT17_VIGRR; single-stranded DNA-binding protein WHY1, chloroplastic | ||||
STRING | XP_007157686.1 | 6e-66 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6416 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 8e-18 | ssDNA-binding transcriptional regulator |