PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g10460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 19133.8 Da PI: 5.0083 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.8 | 8.1e-11 | 129 | 165 | 1 | 38 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++ Vradi11g10460.1 129 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGV 165 899*****************************.**985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.047 | 124 | 173 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.34E-8 | 126 | 165 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0019 | 128 | 172 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-11 | 128 | 166 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-10 | 129 | 165 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-9 | 132 | 166 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MISSQQNQNA PTCYPFPSSP SMGMVCADMM GSLSLATVSN ALSSQESFAY GHHGHTSGVG 60 NGRSTSWSFP FMREFLSSNF EDCSEVGAGE TNSNEKTNNN GKFSEESNPN ENLLSGKEVD 120 SGHSKLCARG HWRPAEDSKL KELVALYGPQ NWNLIAEKLE GRSGVEENNS KSAKNDS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g10460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519753.2 | 1e-116 | transcription factor MYB105-like | ||||
TrEMBL | A0A1S3VN00 | 1e-114 | A0A1S3VN00_VIGRR; transcription factor MYB105-like | ||||
STRING | XP_007157609.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 8e-20 | myb domain protein 105 |