PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g10450.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 256aa    MW: 28322.4 Da    PI: 9.3153
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g10450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-112321446
                     HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Vradi11g10450.1  2 QAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 32
                     79*******.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.626138IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-11132IPR009057Homeodomain-like
SuperFamilySSF466899.36E-10241IPR009057Homeodomain-like
CDDcd001672.80E-7231No hitNo description
PfamPF002493.8E-8231IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MQAHRIYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE QSSAYRRRRM SQSVYKRVEQ  60
NPTFVCSRDN ASTTEQEPSP SYCLNLLHNG VGVTNNLASF PSFHGVGSGE VVDFGLNGSL  120
QNINGVREAM SNTLQVGLRA QAQQAPFDFF SGGGRNDMTG ESNGEIRSWE RSNESVESGL  180
YPDYPQQYLR AMQQLENKTR KNFYSFLNSS WASGSTGKEA SSSACVAGKR DKVVNSDPPD  240
GVPPPFFDFL GVGAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g10450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519753.20.0transcription factor MYB105-like
TrEMBLA0A1S3VN000.0A0A1S3VN00_VIGRR; transcription factor MYB105-like
STRINGXP_007157609.11e-150(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-29myb domain protein 105