PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g10230.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 419aa MW: 47584.7 Da PI: 7.9839

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g10230.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.3e-52	1	128	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrFhPtdeelv +yLk+k++++++++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s Vradi11g10230.1 1 MLPGFRFHPTDEELVGFYLKRKIQQRPFTI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYS 93 579************************9.89***********8888999*********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +glkk+Lvfykgra kg+ktdW+mhe+rl Vradi11g10230.1 94 SeGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 128 956677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	56.074	1	172	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-56	2	172	IPR003441	NAC domain
Pfam	PF02365	1.6E-25	3	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MLPGFRFHPT DEELVGFYLK RKIQQRPFTI ELIKQLDIYK YDPWDLPKLA TTGEKEWYFY 60 CPRDRKYRNS ARPNRVTGAG FWKATGTDRP IYSSEGSKCI GLKKSLVFYK GRAAKGVKTD 120 WMMHEFRLPS LTDSLSPKCF NFQMFVISSF IDFFSLFLIM QESWAICRIF KKTNATAQRA 180 LSQSWVSSLP ETRTSDHIQT KDQNSMQFCS DISFTKKTTL ASHYFTNNYN DAQPLTPNSS 240 TTLCPLDVAS YKSIINPLLY KAFDHFPISN GDLSTSFLFS SPFDTSSDGN TNAKSTMDVS 300 SMLLNMSSSV VGDFNKTSED NTNANTSFGG LQEHGAYPIP FLREMQSTFG EQQYDNIHAL 360 VKGPNVNMPR VDDQELETVR SIGFPFNIGD AWKSNLLWDT SSFPCDLSST YSITKCYT*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MLPGFRFHPT DEELVGFYLK RKIQQRPFTI ELIKQLDIYK YDPWDLPKLA TTGEKEWYFY  60
CPRDRKYRNS ARPNRVTGAG FWKATGTDRP IYSSEGSKCI GLKKSLVFYK GRAAKGVKTD  120
WMMHEFRLPS LTDSLSPKCF NFQMFVISSF IDFFSLFLIM QESWAICRIF KKTNATAQRA  180
LSQSWVSSLP ETRTSDHIQT KDQNSMQFCS DISFTKKTTL ASHYFTNNYN DAQPLTPNSS  240
TTLCPLDVAS YKSIINPLLY KAFDHFPISN GDLSTSFLFS SPFDTSSDGN TNAKSTMDVS  300
SMLLNMSSSV VGDFNKTSED NTNANTSFGG LQEHGAYPIP FLREMQSTFG EQQYDNIHAL  360
VKGPNVNMPR VDDQELETVR SIGFPFNIGD AWKSNLLWDT SSFPCDLSST YSITKCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-51	3	179	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-51	3	179	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-51	3	179	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-51	3	179	19	171	NO APICAL MERISTEM PROTEIN
4dul_A	3e-51	3	179	19	171	NAC domain-containing protein 19
4dul_B	3e-51	3	179	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g10230.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014520507.1	0.0	protein FEZ
Swissprot	Q9ZVH0	1e-100	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3VQN9	0.0	A0A1S3VQN9_VIGRR; protein FEZ
STRING	XP_007157629.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-101	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]