PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g09920.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 271aa MW: 30234.8 Da PI: 6.5137

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g09920.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.2	8.7e-18	49	98	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Vradi11g09920.1 49 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 98 59*****.******93....35999********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.5E-11	49	98	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.83E-21	49	106	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.2E-29	49	105	IPR001471	AP2/ERF domain
CDD	cd00018	7.83E-30	49	105	No hit	No description
PROSITE profile	PS51032	22.115	49	106	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-33	49	112	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-9	50	61	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-9	72	88	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEEAMRRLNG VAPILGPDPK DSSLGENPKR STAVNKRTLR EDGGGGAMRY RGVRRRPWGR 60 YAAEIRDPQS KERRWLGTFD TAEEAACAYD CAARAMRGLK ARTNFVYPTS PQASSATADH 120 FFHSFSDDDS GSGFFCRESS DSGLLEEIVN KFLPKAKPNK CESLPKMESV RNPQEPVLPS 180 LISESALVST AQCYDDTKKG FQKNESFGLS FDHQDLPMQK FDNFNGFHHL QGMALGNEQT 240 MTNHAENCIV EDVFQYQELL NSFAIRMQNA *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-19	49	105	14	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16339853, ECO:0000269\|PubMed:17056621, ECO:0000269\|PubMed:17376809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g09920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022631319.1	1e-100	ethylene-responsive transcription factor ESR2-like
Swissprot	Q9FYK5	2e-36	ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBL	A0A3Q0ELR7	6e-99	A0A3Q0ELR7_VIGRR; ethylene-responsive transcription factor ESR2-like
STRING	XP_007158394.1	9e-84	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4100	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24590.1	3e-14	DORNROSCHEN-like

Publications ? help Back to Top
Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Thoma R,Chandler JW Polarity in the early floral meristem of Arabidopsis. Plant Signal Behav, 2015. 10(4): p. e992733 [PMID:25806573] Comelli P,Glowa D,Chandler JW,Werr W Founder-cell-specific transcription of the DORNRÖSCHEN-LIKE promoter and integration of the auxin response. J. Exp. Bot., 2016. 67(1): p. 143-55 [PMID:26428063] Seeliger I, et al. The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition. Mol. Genet. Genomics, 2016. 291(5): p. 1835-49 [PMID:27277595] Chandler JW,Werr W DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis. J. Exp. Bot., 2017. 68(13): p. 3457-3472 [PMID:28859377] Durán-Medina Y,Serwatowska J,Reyes-Olalde JI,de Folter S,Marsch-Martínez N The AP2/ERF Transcription Factor DRNL Modulates Gynoecium Development and Affects Its Response to Cytokinin. Front Plant Sci, 2017. 8: p. 1841 [PMID:29123539]