PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g08760.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 309aa MW: 34676 Da PI: 6.716

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g08760.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.9	2.7e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+d+++++ g+W+t +++ g++R++k+c++rw +yl Vradi11g08760.1 15 KGPWTPEEDEKLIDYITKHSHGSWRTLPKRAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.301	10	66	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-24	12	65	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-14	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-16	15	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.53E-23	16	90	IPR009057	Homeodomain-like
CDD	cd00167	2.30E-11	17	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-7	66	89	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGRSPCREEI SGVKKGPWTP EEDEKLIDYI TKHSHGSWRT LPKRAGLNRC GKSCRLRWTN 60 YLRPDIKRGQ FTEEDERTII NLHSVLGNKK KLLKMGIDPE THKPRTDLNH LMSLSQLLGM 120 SNLSSVMNST WGNNHLGLQQ DINQLAKIQL LQNLLQLMNS NSFVNMGNPY LFGNPNLNPL 180 FLNGINPLKE PVVLSGSERF ANPSVYSQAQ SECSQQQDVS KSLAIAQDPD YSKISSTNTY 240 HSHENQEENP LPALVAASPR MGTLNPMGSG CGNLAQTSEE SPSNTFFDDW EKLFDDERSG 300 SYWKEILE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-16	10	89	2	80	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g08760.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014520455.2	0.0	transcription factor MYB39
Refseq	XP_022631323.1	0.0	transcription factor MYB39
Swissprot	Q9S9Z2	2e-58	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A1S3VQ94	0.0	A0A1S3VQ94_VIGRR; transcription factor MYB39
STRING	XP_007158283.1	1e-178	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	4e-61	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]