PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g08720.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 484aa    MW: 53313.3 Da    PI: 4.6543
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g08720.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind81.41.4e-25211052102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++ ++sws+++nsf+v+d+ efa+++LpkyFkh+nf+SF       gF+kv+ ++         weF+++ F +g+k+ll+
  Vradi11g08720.1  21 FLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSF-------GFRKVDPDR---------WEFANEGFLRGQKHLLR 98 
                      9********************999***************************9.......9*****999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k 
  Vradi11g08720.1  99 NITRRKP 105
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.98E-2816103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-5217103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-2918103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-2221103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-122144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-125971IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MDSGASAPAA PIPNANAPPP FLSKTYDMVE DPSTDAIVSW SATNNSFIVW DPPEFARDLL  60
PKYFKHNNFS SFGFRKVDPD RWEFANEGFL RGQKHLLRNI TRRKPAHGQN HQQAQQPHGQ  120
SSSVGACVEV GKFGLEEEVE RLKRDKNVLM QELVRLRQQQ QTTDNQLQTM VQRLQGMEQR  180
QQQMMSFLAK AVQSPGFFAQ FVQQQNESNR RISEVNKKRR LKQEGIAETV SAATPDGQIV  240
KYQPLANEAA KAMLKQIMKW DTSRVESFNK NPEEYIIGDA SSSSSGMDSS GSSGWTSGVT  300
LKEVSPASVQ SSHVPAATGT QGHVHPTVKP EIPSVPQAVA SENVTKDGGH GEPSIPVSQA  360
DVLIPDLPPI SEMVVGNMLD IPEENYMATE SDEGYMDPSL GDAGSFPIDF EVISPDNIDD  420
FLGNPSIWDE ILQTPVPEDI DTNIADVPNG NEVQPTENGW SKTQRMDHLT EQMGLLSSDT  480
KRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-221310318129Heat shock factor protein 1
5d5v_B5e-221310318129Heat shock factor protein 1
5d5v_D5e-221310318129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215222NKKRRLKQ
2216221KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g08720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027913797.10.0heat shock factor protein HSF8
SwissprotQ401521e-163HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A4D6LQR20.0A0A4D6LQR2_VIGUN; Heat shock transcription factor 4
STRINGXP_007158271.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-117heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]