PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g08220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRF | ||||||||
Protein Properties | Length: 254aa MW: 28394.8 Da PI: 6.9468 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 42.8 | 9.4e-14 | 68 | 92 | 1 | 25 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegk 25 d+epgrCrRtDGKkWRCsr++ +++ Vradi11g08220.1 68 DPEPGRCRRTDGKKWRCSRDAHPDS 92 79********************997 PP | |||||||
2 | QLQ | 58.3 | 2.3e-20 | 14 | 49 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ+++L++Q+l++KyL a++ vPp+Ll++i+k Vradi11g08220.1 14 PFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRK 49 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.5E-12 | 13 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.693 | 14 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-15 | 14 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 13.056 | 68 | 112 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.4E-10 | 69 | 92 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSVPPPSTAA MWTPFTAAQW HELEHQALIF KYLKAGLSVP PDLLLPIRKS LQFMAHPSLG 60 GYYGKKIDPE PGRCRRTDGK KWRCSRDAHP DSNATTATPT LPHLHMDPLT LSGDNTKKTY 120 RFGLNSEADE HVLQKDLGSV RYQGYDFTSD SMWSHMSPIP SSTVSESRSG STMLGNCFQQ 180 QTMRDAELLN LETARTKDLI FSSQLSSGGS LKQEYQSPQS LFSDWDWKKD LSSSAIEYRP 240 NKDFNCNPDA NVD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g08220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027360802.1 | 1e-132 | growth-regulating factor 5-like | ||||
TrEMBL | A0A0S3T392 | 1e-109 | A0A0S3T392_PHAAN; Uncharacterized protein | ||||
STRING | XP_007158190.1 | 1e-107 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14948 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-30 | growth-regulating factor 5 |