PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g07760.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BES1
Protein Properties Length: 658aa    MW: 74542.9 Da    PI: 6.3321
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g07760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822159.32.6e-49551992142
           DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                      ++g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvv++DGttyr+ + p+   +++gs+a +s+es+l+
  Vradi11g07760.1  55 AKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQ-CPPP---SHMGSFAAKSVESQLS 144
                      689******************************************************************5.4444...69************** PP

           DUF822  96 .sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsv 142
                        sl++++++  +e++ ++++ ++ +sp+s+ds+ +a+        ++ +p+ +v
  Vradi11g07760.1 145 gGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERdsknekyTNASPINTV 199
                      9***********************************9886665555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.0E-5056202IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514455.74E-159220654IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.804.7E-172223653IPR013781Glycoside hydrolase, catalytic domain
PfamPF013735.1E-87244618IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56260274IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56281299IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56303324IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56396418IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56469488IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56503519IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56520531IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56538561IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.2E-56576598IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MKSINDDGST QDLDPQSDHS SDYLTHPNSN PQPHPHPRRP RGFAAAAAVT TNSVAKGKKE  60
REKEKERTKL RERHRRAITS RMLAGLRQYG NFPLPARADM NDVLAALARE AGWVVDADGT  120
TYRQCPPPSH MGSFAAKSVE SQLSGGSLRN CSVKETIENQ TSVLRIDECL SPASIDSVVI  180
AERDSKNEKY TNASPINTVD CLEADQLMQD IHSGVHENDF TGTPYVPVYV KLPAGIINKF  240
CQLIDPEGIR QELMHMKSLN VDGVVVDCWW GIVEGWSPQK YVWSGYRELF NIVRKFKLKL  300
QVVMAFHECG GNDSSDALIS LPQWVLDIGK DNQDIFFTDR EGRRNTECLS WGIDKERVLK  360
GRTGIEVYFD MMRSFRTEFD DLFAEGLISA VEVGLGASGE LKYPSFSERM GWRYPGIGEF  420
QCYDKYLQHS LRRAAKLRGH SFWARGPDNA GHYNSMPHET GFFCERGDYD NYYGRFFLHW  480
YSQTLIDHAD NVLSLATLAF EETKIIVKVP AVYWWYKTPS HAAELTAGYH NPTNQDGYFP  540
VFEVLRKHAV TMKFVCLGFH LSSQEANESL IDPEGLSWQV LNSAWDRGLM AGGENALLCY  600
DREGYKRLVD TAKPRNDPDH RHFSFFVYQQ PSLLQANVCL SDLDFFVKCM HGEMTDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12822561511401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g07760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520752.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1S3VRD40.0A0A1S3VRD4_VIGRR; Beta-amylase
STRINGXP_007158095.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]