PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g07090.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 342aa MW: 39753.5 Da PI: 6.6528

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g07090.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.3	1.1e-26	203	252	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isl+dl +yF +pi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Vradi11g07090.1 203 AKISLSDLVQYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 252 589*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.963	187	273	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-22	205	252	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MRSLHVYRQG DEEERAVERE FVFSECGSYV EMQATPILKF VKSHVSRVFQ GYKNGVWLCI 60 FAYHADHTPR FYRIPPLLLV SRNPKLQMVP NLLHDLHVIY KLDRKEEDKD TTLESKGEEC 120 QGNSDNFQPS EKVFPVLDQD LNYLPYEEDE SELLENETDV ESSPVLQYHE VQVFTIIDYI 180 VVMRSEFAGL LGKKKRAPSD LVAKISLSDL VQYFGMPIVE ASRNLNVGLT VLKRKCREFG 240 IPRWPHRKIK SLDSLIHDLQ VLLALPVEHM QEEAKSQELE DMEAAMAVAK RQRMLECEKE 300 NIEKKPFMDI QTETKRFRQD VFKRRHRARA VGKHNSTVSN T*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MRSLHVYRQG DEEERAVERE FVFSECGSYV EMQATPILKF VKSHVSRVFQ GYKNGVWLCI  60
FAYHADHTPR FYRIPPLLLV SRNPKLQMVP NLLHDLHVIY KLDRKEEDKD TTLESKGEEC  120
QGNSDNFQPS EKVFPVLDQD LNYLPYEEDE SELLENETDV ESSPVLQYHE VQVFTIIDYI  180
VVMRSEFAGL LGKKKRAPSD LVAKISLSDL VQYFGMPIVE ASRNLNVGLT VLKRKCREFG  240
IPRWPHRKIK SLDSLIHDLQ VLLALPVEHM QEEAKSQELE DMEAAMAVAK RQRMLECEKE  300
NIEKKPFMDI QTETKRFRQD VFKRRHRARA VGKHNSTVSN T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g07090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-129	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014520328.1	0.0	protein RKD5 isoform X1
TrEMBL	A0A1S3VPK5	0.0	A0A1S3VPK5_VIGRR; protein RKD5 isoform X1
STRING	XP_007157999.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-69	RWP-RK domain-containing protein