PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g06620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 209aa MW: 23703 Da PI: 9.2966 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26.3 | 1.6e-08 | 125 | 177 | 4 | 54 |
XCHHHCHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRK..kaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++r +r++kNRe+ + q+K +a++ eLe +v++L++eN +Lk + +++k Vradi11g06620.1 125 DRRNKRMIKNRESRIKTKQKKchEAYTNELEVEVEQLKEENARLKRQQKQWKR 177 689******************8789**********************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0047 | 122 | 191 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.2E-7 | 125 | 178 | No hit | No description |
CDD | cd14707 | 2.23E-17 | 126 | 174 | No hit | No description |
Pfam | PF00170 | 7.5E-7 | 126 | 176 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEEVWKDINL ATLNDQVTRS TTTHSNLGGV ILQDFLARPF TIDPPNTILS SQSPTLYAAP 60 SSPAPPLLTA LSLSSHPHLR FDPHTQKPSH PHHPPPPSNH SCFTTPTTAS LGAKRFAEPD 120 CNLGDRRNKR MIKNRESRIK TKQKKCHEAY TNELEVEVEQ LKEENARLKR QQKQWKRGPE 180 KCYMLEDILQ DKTFCSFRFV APTIIMSH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g06620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022631457.1 | 1e-103 | protein FD-like | ||||
TrEMBL | A0A3Q0EMK6 | 1e-102 | A0A3Q0EMK6_VIGRR; protein FD-like | ||||
STRING | XP_007157879.1 | 4e-63 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3755 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 9e-11 | bZIP family protein |