PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g05250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 1461aa MW: 165031 Da PI: 7.0039 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00079 | 839 | 862 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C +C sF++k +L++H + H Vradi11g05250.1 839 YACAICLDSFTNKKLLETHVQErH 862 89*****************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 2.6 | 805 | 828 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 807 | 828 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.767 | 839 | 862 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 839 | 862 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 841 | 863 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.8 | 873 | 896 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 875 | 896 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.432 | 942 | 970 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.3 | 942 | 965 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 944 | 965 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF82199 | 1.29E-31 | 1183 | 1386 | No hit | No description |
Gene3D | G3DSA:2.170.270.10 | 2.7E-36 | 1185 | 1459 | No hit | No description |
PROSITE profile | PS50280 | 11.179 | 1288 | 1437 | IPR001214 | SET domain |
SMART | SM00317 | 4.4E-5 | 1295 | 1443 | IPR001214 | SET domain |
Pfam | PF00856 | 1.4E-7 | 1306 | 1436 | IPR001214 | SET domain |
SuperFamily | SSF82199 | 3.6E-5 | 1426 | 1457 | No hit | No description |
PROSITE profile | PS50868 | 8.217 | 1444 | 1460 | IPR003616 | Post-SET domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006342 | Biological Process | chromatin silencing | ||||
GO:1900109 | Biological Process | regulation of histone H3-K9 dimethylation | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1461 aa Download sequence Send to blast |
MEVLCSGVQY AGESDCAQQS SGTAFVYQEE TNCAESGGQD KLVAGLLNES SHKMQGPQIE 60 RQGGLSTNSD CQCIGASCCD CQVDDQNEYC GFHDFEEDIM NEPCLTSDNS ISVVDTIESE 120 SPNNSREGDL SCSEPKWLEG DGSVALWVKW RGKWQAGIRC ARADWPLSTL KAKPTHERKK 180 YFVIFFPHTR IYSWADMLLV RSINDFPHPI AYKTHQVGLK MVKDLTVARR FIMRKLVVGM 240 LNMVDQFPFN ALTETARDMK VWKEFAMEAS RCNGYSDFGR MLLKLHSSIL QHHINVDWFR 300 HSYTSWTERC QSANSADSVE LLKEELFDSI LWNGINTLSD APVQSTLSSE WKTWKHDVMK 360 WFMTPPSLSI SKDTQQQSYD DLFPANLQVC RKRAKLEVRR ADTHASQVEI KAQTVALQAD 420 PGFFKNQGIL STLADESCKQ EGVREVSMAA DSPGHLVDKW NGIVVENTDP HFLHTTPTKE 480 MTVAKSVESG SKNRQCIAYI EAKGRQCVRW ANDGDVYCCV HLSSRFLGSS TKTEKPVPLD 540 TPMCEGTTVL GTRCKHRALP GSLFCKKHRP HAETEQISNI PQNTLKRKHE ENYTGSEGIL 600 SRDLVLVNVE SPLQMDPVSS IGGDSVYGEN NSNEKPMHSE HYHNAMESLQ CIGSPPYDKM 660 NPCREGPKRY CLYCESHLPS WLKRARNGKS RIVSKEVFTE LLRDCNSWEQ KVHLHKACEL 720 FYRLLKSILS LRNPVPKDVQ FQWALTEASK DSSVGEFFKK LVHSEKARIK SLWGFNDDMD 780 ITSVMEEPPL LPSTNDDYYD KENAIKCKLC SAEFPDDQEL GNHWMDSHKK EAQWLFRGYA 840 CAICLDSFTN KKLLETHVQE RHHVQFVEQC MLLQCIPCGS HFGNTEQLWQ HVLSVHPVDF 900 KPSKAPEQQT LSTGEDSPVN RDQGNSAPLE NNSENTGGFR KFVCRFCGLK FDLLPDLGRH 960 HQAAHMGPNL ASSRPAKRGV RYYAYRLKSG RLSRPRFKKS LAAASYRLRN KANANLKRSI 1020 QETNSHGTGG ITGQPHVAET TNIGRLAEHQ CSAVSKILFS EIQKTKPRPN HLDILSIARS 1080 ACCKVSLVAS LEEKYGILPE KLYLKAAKLC SEHNILVSWH REGFICPSGC NVSKGQVLLS 1140 PLESLPNSSV MPKSGNSTDP TSDEWEVDEF HCIINSRTLK LGSLQKAVVL CDDISFGKES 1200 IPVICVVDQE LVHSLHINGC NGQNINPSRP WESFTYVTKP MLDQSLILDS ESLQLGCACP 1260 YTTCSPETCD HVYLFGNDYD DAKDIFGKPM RGRFPYDENG RIILEGWAVR AGEAILRGTF 1320 VCEYIGEVLD MKEAHDRRRS YGTEHCSYFY DIDARVNDMS RLIEGQAQYV IDATKFGNVS 1380 RFINHRDRIV DIEGHMTSLI KRYPAFLMKR KGRLIDKYVT RNVLSIALGE ELTYDYQYEH 1440 VLSEGSPCLC ESLKCRGRLY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k5k_A | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 |
3k5k_B | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 |
3rjw_A | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase EHMT2 |
3rjw_B | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase EHMT2 |
5t0k_A | 4e-13 | 1306 | 1456 | 137 | 264 | Histone-lysine N-methyltransferase EHMT2 |
5t0k_B | 4e-13 | 1306 | 1456 | 137 | 264 | Histone-lysine N-methyltransferase EHMT2 |
5t0m_A | 4e-13 | 1306 | 1456 | 137 | 264 | Histone-lysine N-methyltransferase EHMT2 |
5t0m_B | 4e-13 | 1306 | 1456 | 137 | 264 | Histone-lysine N-methyltransferase EHMT2 |
5ttf_A | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase EHMT2 |
5ttf_B | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase EHMT2 |
5ttf_C | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase EHMT2 |
5ttf_D | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase EHMT2 |
5tuy_A | 4e-13 | 1306 | 1456 | 129 | 256 | Histone-lysine N-methyltransferase EHMT2 |
5tuy_B | 4e-13 | 1306 | 1456 | 129 | 256 | Histone-lysine N-methyltransferase EHMT2 |
5v9i_A | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase EHMT2 |
5v9i_B | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase EHMT2 |
5v9i_C | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase EHMT2 |
5v9i_D | 4e-13 | 1306 | 1456 | 139 | 266 | Histone-lysine N-methyltransferase EHMT2 |
5vse_A | 4e-13 | 1306 | 1456 | 134 | 261 | Histone-lysine N-methyltransferase EHMT2 |
5vse_B | 4e-13 | 1306 | 1456 | 134 | 261 | Histone-lysine N-methyltransferase EHMT2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone methyltransferase that functions together with its binding partner LDL1/SWP1 as one of the regulators of flower timing in Arabidopsis (PubMed:17224141). Mediates H3K9me2 deposition and regulates gene expression in a DNA methylation-independent manner. Binds DNA through its zinc fingers and represses the expression of a subset of stimulus response genes. May represent a novel mechanism for plants to regulate their chromatin and transcriptional state, which may allow for the adaptability and modulation necessary to rapidly respond to environment or developmental cues (PubMed:23071452). {ECO:0000269|PubMed:17224141, ECO:0000269|PubMed:23071452}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g05250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520854.1 | 0.0 | histone-lysine N-methyltransferase SUVR5 | ||||
Refseq | XP_014520855.1 | 0.0 | histone-lysine N-methyltransferase SUVR5 | ||||
Swissprot | O64827 | 0.0 | SUVR5_ARATH; Histone-lysine N-methyltransferase SUVR5 | ||||
TrEMBL | A0A1S3VRE2 | 0.0 | A0A1S3VRE2_VIGRR; histone-lysine N-methyltransferase SUVR5 | ||||
STRING | XP_007156871.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5019 | 2 | 2 |
Publications ? help Back to Top | |||
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