PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g05250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 1461aa    MW: 165031 Da    PI: 7.0039
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g05250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00079839862123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C +C  sF++k +L++H +  H
  Vradi11g05250.1 839 YACAICLDSFTNKKLLETHVQErH 862
                      89*****************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.6805828IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280807828IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767839862IPR007087Zinc finger, C2H2
SMARTSM003550.13839862IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280841863IPR007087Zinc finger, C2H2
SMARTSM003552.8873896IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280875896IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432942970IPR007087Zinc finger, C2H2
SMARTSM003551.3942965IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280944965IPR007087Zinc finger, C2H2
SuperFamilySSF821991.29E-3111831386No hitNo description
Gene3DG3DSA:2.170.270.102.7E-3611851459No hitNo description
PROSITE profilePS5028011.17912881437IPR001214SET domain
SMARTSM003174.4E-512951443IPR001214SET domain
PfamPF008561.4E-713061436IPR001214SET domain
SuperFamilySSF821993.6E-514261457No hitNo description
PROSITE profilePS508688.21714441460IPR003616Post-SET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006342Biological Processchromatin silencing
GO:1900109Biological Processregulation of histone H3-K9 dimethylation
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1461 aa     Download sequence    Send to blast
MEVLCSGVQY AGESDCAQQS SGTAFVYQEE TNCAESGGQD KLVAGLLNES SHKMQGPQIE  60
RQGGLSTNSD CQCIGASCCD CQVDDQNEYC GFHDFEEDIM NEPCLTSDNS ISVVDTIESE  120
SPNNSREGDL SCSEPKWLEG DGSVALWVKW RGKWQAGIRC ARADWPLSTL KAKPTHERKK  180
YFVIFFPHTR IYSWADMLLV RSINDFPHPI AYKTHQVGLK MVKDLTVARR FIMRKLVVGM  240
LNMVDQFPFN ALTETARDMK VWKEFAMEAS RCNGYSDFGR MLLKLHSSIL QHHINVDWFR  300
HSYTSWTERC QSANSADSVE LLKEELFDSI LWNGINTLSD APVQSTLSSE WKTWKHDVMK  360
WFMTPPSLSI SKDTQQQSYD DLFPANLQVC RKRAKLEVRR ADTHASQVEI KAQTVALQAD  420
PGFFKNQGIL STLADESCKQ EGVREVSMAA DSPGHLVDKW NGIVVENTDP HFLHTTPTKE  480
MTVAKSVESG SKNRQCIAYI EAKGRQCVRW ANDGDVYCCV HLSSRFLGSS TKTEKPVPLD  540
TPMCEGTTVL GTRCKHRALP GSLFCKKHRP HAETEQISNI PQNTLKRKHE ENYTGSEGIL  600
SRDLVLVNVE SPLQMDPVSS IGGDSVYGEN NSNEKPMHSE HYHNAMESLQ CIGSPPYDKM  660
NPCREGPKRY CLYCESHLPS WLKRARNGKS RIVSKEVFTE LLRDCNSWEQ KVHLHKACEL  720
FYRLLKSILS LRNPVPKDVQ FQWALTEASK DSSVGEFFKK LVHSEKARIK SLWGFNDDMD  780
ITSVMEEPPL LPSTNDDYYD KENAIKCKLC SAEFPDDQEL GNHWMDSHKK EAQWLFRGYA  840
CAICLDSFTN KKLLETHVQE RHHVQFVEQC MLLQCIPCGS HFGNTEQLWQ HVLSVHPVDF  900
KPSKAPEQQT LSTGEDSPVN RDQGNSAPLE NNSENTGGFR KFVCRFCGLK FDLLPDLGRH  960
HQAAHMGPNL ASSRPAKRGV RYYAYRLKSG RLSRPRFKKS LAAASYRLRN KANANLKRSI  1020
QETNSHGTGG ITGQPHVAET TNIGRLAEHQ CSAVSKILFS EIQKTKPRPN HLDILSIARS  1080
ACCKVSLVAS LEEKYGILPE KLYLKAAKLC SEHNILVSWH REGFICPSGC NVSKGQVLLS  1140
PLESLPNSSV MPKSGNSTDP TSDEWEVDEF HCIINSRTLK LGSLQKAVVL CDDISFGKES  1200
IPVICVVDQE LVHSLHINGC NGQNINPSRP WESFTYVTKP MLDQSLILDS ESLQLGCACP  1260
YTTCSPETCD HVYLFGNDYD DAKDIFGKPM RGRFPYDENG RIILEGWAVR AGEAILRGTF  1320
VCEYIGEVLD MKEAHDRRRS YGTEHCSYFY DIDARVNDMS RLIEGQAQYV IDATKFGNVS  1380
RFINHRDRIV DIEGHMTSLI KRYPAFLMKR KGRLIDKYVT RNVLSIALGE ELTYDYQYEH  1440
VLSEGSPCLC ESLKCRGRLY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k5k_A4e-1313061456139266Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
3k5k_B4e-1313061456139266Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
3rjw_A4e-1313061456139266Histone-lysine N-methyltransferase EHMT2
3rjw_B4e-1313061456139266Histone-lysine N-methyltransferase EHMT2
5t0k_A4e-1313061456137264Histone-lysine N-methyltransferase EHMT2
5t0k_B4e-1313061456137264Histone-lysine N-methyltransferase EHMT2
5t0m_A4e-1313061456137264Histone-lysine N-methyltransferase EHMT2
5t0m_B4e-1313061456137264Histone-lysine N-methyltransferase EHMT2
5ttf_A4e-1313061456139266Histone-lysine N-methyltransferase EHMT2
5ttf_B4e-1313061456139266Histone-lysine N-methyltransferase EHMT2
5ttf_C4e-1313061456139266Histone-lysine N-methyltransferase EHMT2
5ttf_D4e-1313061456139266Histone-lysine N-methyltransferase EHMT2
5tuy_A4e-1313061456129256Histone-lysine N-methyltransferase EHMT2
5tuy_B4e-1313061456129256Histone-lysine N-methyltransferase EHMT2
5v9i_A4e-1313061456139266Histone-lysine N-methyltransferase EHMT2
5v9i_B4e-1313061456139266Histone-lysine N-methyltransferase EHMT2
5v9i_C4e-1313061456139266Histone-lysine N-methyltransferase EHMT2
5v9i_D4e-1313061456139266Histone-lysine N-methyltransferase EHMT2
5vse_A4e-1313061456134261Histone-lysine N-methyltransferase EHMT2
5vse_B4e-1313061456134261Histone-lysine N-methyltransferase EHMT2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone methyltransferase that functions together with its binding partner LDL1/SWP1 as one of the regulators of flower timing in Arabidopsis (PubMed:17224141). Mediates H3K9me2 deposition and regulates gene expression in a DNA methylation-independent manner. Binds DNA through its zinc fingers and represses the expression of a subset of stimulus response genes. May represent a novel mechanism for plants to regulate their chromatin and transcriptional state, which may allow for the adaptability and modulation necessary to rapidly respond to environment or developmental cues (PubMed:23071452). {ECO:0000269|PubMed:17224141, ECO:0000269|PubMed:23071452}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g05250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520854.10.0histone-lysine N-methyltransferase SUVR5
RefseqXP_014520855.10.0histone-lysine N-methyltransferase SUVR5
SwissprotO648270.0SUVR5_ARATH; Histone-lysine N-methyltransferase SUVR5
TrEMBLA0A1S3VRE20.0A0A1S3VRE2_VIGRR; histone-lysine N-methyltransferase SUVR5
STRINGXP_007156871.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF501922
Publications ? help Back to Top
  1. Baumbusch LO, et al.
    The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes.
    Nucleic Acids Res., 2001. 29(21): p. 4319-33
    [PMID:11691919]
  2. Caro E, et al.
    The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.
    PLoS Genet., 2012. 8(10): p. e1002995
    [PMID:23071452]