PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g04020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 22635.2 Da PI: 10.5804 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.2 | 2.9e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Vradi11g04020.1 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55 79***********************************9************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.669 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.14E-15 | 2 | 68 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.43E-18 | 6 | 57 | No hit | No description |
PROSITE profile | PS51504 | 14.189 | 115 | 205 | IPR005818 | Linker histone H1/H5, domain H15 |
SMART | SM00526 | 1.4E-4 | 121 | 201 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 1.96E-8 | 124 | 197 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.1E-9 | 126 | 198 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 2.4E-5 | 128 | 197 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLLPSP KIDNNHMALS TAVQRDRGAG DPKPLAVSGG VSPNSKEKVS 120 RLQNFQLDNI ILESIIKLKE PKGSDRAAIA SYIEYQCMES NDNSSPHQDQ YCSTPTLRKL 180 LSTKLKHMVA SGKLMKMVSA SALLI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g04020.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-109 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519201.1 | 1e-127 | telomere repeat-binding factor 2 isoform X1 | ||||
Refseq | XP_014519203.1 | 1e-127 | telomere repeat-binding factor 2 isoform X1 | ||||
Refseq | XP_022631317.1 | 1e-127 | telomere repeat-binding factor 2 isoform X2 | ||||
Refseq | XP_022631318.1 | 1e-127 | telomere repeat-binding factor 2 isoform X1 | ||||
Swissprot | Q8VWK4 | 4e-55 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1S3VLG1 | 1e-125 | A0A1S3VLG1_VIGRR; telomere repeat-binding factor 2 isoform X1 | ||||
STRING | XP_007156706.1 | 1e-119 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 1e-52 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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