PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g02980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 298aa    MW: 33544.4 Da    PI: 7.9366
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g02980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012426123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     +kC+ C+++F +   L  H++ H
  Vradi11g02980.1  4 HKCKLCSRTFANGRALGGHMKAH 26
                     79******************998 PP
2zf-C2H213.30.00025199221123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+F+++  L +H + +
  Vradi11g02980.1 199 HQCQSCDKTFRSSRALGSHRSIC 221
                      79*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.01E-5329No hitNo description
PfamPF139121.6E-7327IPR007087Zinc finger, C2H2
SMARTSM003550.036426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-7197253No hitNo description
SMARTSM0035554199219IPR015880Zinc finger, C2H2-like
PfamPF139123.1E-4199218IPR007087Zinc finger, C2H2
SMARTSM003550.17231253IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-10231254IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494231253IPR007087Zinc finger, C2H2
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MERHKCKLCS RTFANGRALG GHMKAHLATL PLPLPPKPQP LPQSINTFSS NSSSRQDIQQ  60
HPHNEQQQKA LLNYALRENP KKCFRLADPE FDSGAVVQDR ESETESKNPT RRRSKRSRRP  120
ANSQPKARPK LSFMESPEPV SSVSDTSPEE DVAMCLMMLS RDRWSKNTHA AFDNNNPMED  180
DEEERSLEEI KFRRVCRKHQ CQSCDKTFRS SRALGSHRSI CEGSGNDSKI FECPFCFKVF  240
GSGQALGGHK RSHMVPSSSS TANDSTRFKE SFIDLNFPAP PEEEDDLSVV SDAQFDD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g02980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520182.10.0zinc finger protein ZAT9-like
TrEMBLA0A1S3VPR40.0A0A1S3VPR4_VIGRR; zinc finger protein ZAT9-like
STRINGXP_007157307.11e-157(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-37C2H2-like zinc finger protein