PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g02410.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 175aa    MW: 18947.4 Da    PI: 6.9739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g02410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.7e-151260255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      y+G+r  ++  +Wv+eIr+p+    +  r++lg+f t+e+Aa+a++ a+++l+g
  Vradi11g02410.1 12 LYRGIR--SRGRKWVSEIREPR----KaSRIWLGTFPTPEMAAAAYDVAALALKG 60
                     69***7..44568*******94....36***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.09E-131170No hitNo description
PfamPF008471.6E-81160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-241269IPR001471AP2/ERF domain
SMARTSM003802.7E-251274IPR001471AP2/ERF domain
PROSITE profilePS5103218.5051268IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-161270IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAPSPSSKRH PLYRGIRSRG RKWVSEIREP RKASRIWLGT FPTPEMAAAA YDVAALALKG  60
DGAVLNLPHS VSKYQIPATN SAADIRTAAS AAAAMMKAET ESSHNIASQT ETTHIDATTW  120
RFENDFLDEE AIFGMPSLLV DMAGGMLLSP PRMSPPPSDN SPEKQAAETL WSYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1410721276Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g02410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520566.11e-125ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ905e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1S3VQA51e-124A0A1S3VQA5_VIGRR; ethylene-responsive transcription factor ERF027-like
STRINGXP_007158457.11e-94(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-28ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]