PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g01790.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 237aa    MW: 26077.9 Da    PI: 4.5576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g01790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202778156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                     ++++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ kl+g+
  Vradi11g01790.1 27 KKFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAALVYDNAAIKLRGP 78
                     59********.**********84....34*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.52E-332784No hitNo description
SuperFamilySSF541711.11E-212884IPR016177DNA-binding domain
PROSITE profilePS5103223.5782885IPR001471AP2/ERF domain
PfamPF008472.4E-132877IPR001471AP2/ERF domain
SMARTSM003801.6E-362891IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-302884IPR001471AP2/ERF domain
PRINTSPR003672.4E-102940IPR001471AP2/ERF domain
PRINTSPR003672.4E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVNNRVRRRS VVGKGRVAET PGGSTGKKFR GVRQRPWGKW AAEIRDPSRR VRLWLGTYDT  60
AEEAALVYDN AAIKLRGPDA LTNFITPPAT WHNKDQMPVS NGYASIEETQ NKNLFSPTSV  120
LHSCSLSEEA ESVTGKDDDF SSVSESSKAK AESLFPVPIP SELKFDFEDC LAAPDVYGDL  180
DSAAAAESVL FSDDDWPGVF LTACDDFGLK SWHADRNHDF FQDIDDLFVS DPLLAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212484162ATERF1
3gcc_A2e-212484162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g01790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520301.11e-171ethylene-responsive transcription factor CRF1-like
TrEMBLA0A1S3VPJ31e-169A0A1S3VPJ3_VIGRR; ethylene-responsive transcription factor CRF1-like
STRINGXP_007158558.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-39cytokinin response factor 2