PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g01710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 19747.3 Da PI: 7.1343 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.3 | 4.4e-09 | 2 | 28 | 30 | 56 |
AP2 30 rfslgkfgtaeeAakaaiaarkklege 56 r++lg+++tae Aa a+++a+ kl+ge Vradi11g01710.1 2 RVWLGTYDTAEAAAYAYDRAAYKLRGE 28 79***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.144 | 1 | 35 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-5 | 2 | 41 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-11 | 2 | 35 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-5 | 2 | 28 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-15 | 2 | 36 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MRVWLGTYDT AEAAAYAYDR AAYKLRGEYA RLNFPNLKDP TKLGFGDSAR LNALKSSVDA 60 KIQAICQKVK RERAKKIAAK KLSSATAHAN RKESEKINSS ASSSSSSLPL SPPSIFCDNW 120 ANELFSPTVS EDGIWKGENS PTSVSTECPM MVTDETEFEG CSLARLPSFD PELIWEVLAV 180 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g01710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519928.1 | 1e-129 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 4e-33 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A1S3VNG8 | 1e-127 | A0A1S3VNG8_VIGRR; ethylene-responsive transcription factor ERF061 | ||||
STRING | XP_007158572.1 | 1e-95 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64380.1 | 3e-24 | ERF family protein |
Publications ? help Back to Top | |||
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