PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g01560.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 351aa    MW: 39661.7 Da    PI: 6.5205
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g01560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS245.52.1e-75492501209
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+ v+sg+le+a+ lL+++s+laspdgd++qR+aayfteALa r+++++++l kal++++ +   +se + ++klf+e++P+lk+s
  Vradi11g01560.1  49 LIHLLIGCANQVASGNLENANMLLEQISQLASPDGDTIQRVAAYFTEALADRILKTWPGLHKALNSTRIA--MVSEGILVQKLFFELFPFLKMS 140
                      689*************************************************************999988..69******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      ++++NqaI+ea+ege++vH+iD++++ ++QW+aL++ L++Rpegpp+lRiTgv++    +ke l +++++L++ Ae+l++pf+fn+ v++++e+
  Vradi11g01560.1 141 YILTNQAIVEAMEGEKMVHVIDLNATGPAQWVALFRVLSARPEGPPHLRITGVHH----QKEVLDQMAHKLTEEAEKLDIPFQFNP-VVSKIEN 229
                      *******************************************************....9**************************.799**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlq 209
                      l++++Lrvk+gEala++++lq
  Vradi11g01560.1 230 LDFDKLRVKTGEALAISSILQ 250
                      *****************9987 PP
2GRAS111.98.4e-35251347278374
             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +s +r+k+E++llg+ei+n+vacegaerrerhe++ kW +rl+++GF +vpls + ++qa + l++++ +gyr+ ee+g+++++W+dr+L+sv+
  Vradi11g01560.1 251 ASLDRMKIEKMLLGEEIKNIVACEGAERRERHEKMDKWIQRLDSSGFANVPLSRQGVTQAMRFLENYGCNGYRMREENGCVIIYWQDRTLFSVT 344
                      5789****************************************************************************************** PP

             GRAS 372 aWr 374
                      aWr
  Vradi11g01560.1 345 AWR 347
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.57123350IPR005202Transcription factor GRAS
PfamPF035147.2E-7349250IPR005202Transcription factor GRAS
PfamPF035142.9E-32251347IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MESVFQEEGS SSVTSSPLQF FSMMSLSPGI GSPYPWLREL KSEERGLYLI HLLIGCANQV  60
ASGNLENANM LLEQISQLAS PDGDTIQRVA AYFTEALADR ILKTWPGLHK ALNSTRIAMV  120
SEGILVQKLF FELFPFLKMS YILTNQAIVE AMEGEKMVHV IDLNATGPAQ WVALFRVLSA  180
RPEGPPHLRI TGVHHQKEVL DQMAHKLTEE AEKLDIPFQF NPVVSKIENL DFDKLRVKTG  240
EALAISSILQ ASLDRMKIEK MLLGEEIKNI VACEGAERRE RHEKMDKWIQ RLDSSGFANV  300
PLSRQGVTQA MRFLENYGCN GYRMREENGC VIIYWQDRTL FSVTAWRSRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-54373497381Protein SCARECROW
5b3h_A2e-54333492380Protein SCARECROW
5b3h_D2e-54333492380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g01560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519506.11e-180scarecrow-like protein 3
SwissprotQ9LPR81e-124SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S3VMA81e-178A0A1S3VMA8_VIGRR; scarecrow-like protein 3
STRINGXP_007158592.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2149834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-126scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]