PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g01350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 134aa    MW: 14884.8 Da    PI: 10.1022
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g01350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-192069255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+GVr++k +g+Wv+eIr+p   gk+ r++lg++ ++e+Aa+a++ a++ l+g
  Vradi11g01350.1 20 SYRGVRQRK-WGKWVSEIREP---GKKSRIWLGSYESPEMAAAAYDVAALHLRG 69
                     6*******9.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-222078IPR016177DNA-binding domain
SMARTSM003801.9E-372083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-322078IPR001471AP2/ERF domain
PROSITE profilePS5103223.2612077IPR001471AP2/ERF domain
PfamPF008473.7E-132069IPR001471AP2/ERF domain
PRINTSPR003673.6E-132132IPR001471AP2/ERF domain
CDDcd000182.18E-222179No hitNo description
PRINTSPR003673.6E-135979IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDQEPTSTMQ QCGIAPTATS YRGVRQRKWG KWVSEIREPG KKSRIWLGSY ESPEMAAAAY  60
DVAALHLRGR AARLNFPELA ETLPRPASSK SEDVQNKRQI SSVLQVSNLS IGRDPPFHWM  120
TLQSPPRLSG EGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-172177360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-172177663ATERF1
3gcc_A2e-172177663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g01350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-139AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520496.11e-63ethylene-responsive transcription factor ERF022
SwissprotQ9C9I26e-39ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1S3VQ353e-62A0A1S3VQ35_VIGRR; ethylene-responsive transcription factor ERF022
STRINGXP_007157008.13e-50(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.18e-27ERF family protein