PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi11g01070.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 890aa MW: 98740.3 Da PI: 4.7419

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi11g01070.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.6	9.3e-11	751	794	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+W++++ el+++a+++lG++ ++ I + ++ +t+ q+k+++ k Vradi11g01070.1 751 RGKWSKQDTELFYEAIRELGTD-FSMIQQLFP-DKTRRQIKLKYKK 794 89******************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	8.3E-26	744	825	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.9E-7	746	794	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.337	749	797	IPR017884	SANT domain
SMART	SM00717	1.1E-9	750	798	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.98E-10	752	798	IPR009057	Homeodomain-like
CDD	cd00167	3.18E-7	753	794	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence Send to blast
MDPFDDLLPE TTVARIRPGT KFAPKAKAKQ RPRKEVPSSE HATSSKDAGN ECQNVGPSTL 60 SVPAKESMGF IHQTQVQFPN SESGNPDQDS VQGDSAALVD SSTITVSEIG AGQNSTNFLE 120 SAFEAGPTDF DGDSVTNFVF ETNLNNGTTQ PVHHANVVVN KLNNLAAPFS SCSTIDRMKE 180 PPKNWEGSFL DINKYLELID NSLQLGTDLS FGSVSDNKVV SAEIELDPFS DVLPDLPARN 240 AHKFKPKIKP RPRVGNMPAS ASSDVMMEKS VELPTSCSTD FQSFQSTSVL NQSTSLPLPT 300 SEILRKTYMP DKFGNTSSNV SISEDSKSLA AATPSQLDSL NAMLSVDAVH NGTRDWPSTF 360 GKSSGEAADI FSGLESLDDF LTQATTDTGK PALHSFNEKG AEENFVTPVC SSINSFRECD 420 NTQVQRCPTP QDPVTFNEAT DLNESDTHTK NRMSETEEIV DLNPAYPIDD VFDYQSMKSG 480 EDPTSGIPVH EDLTNAADSS TLADLLHAND SREKEVANQR NRDGSDSCSL RKNKRSSISG 540 EEDNGGKTSR QRRKLAACKP KNSSLNEDVE DDNDIDSPYH SNEHELQEND DDYEVDHSSK 600 KKRGSKSSQK KSVAKSGKTS QRRKKADDDV QKTKEPPKKF SHSTRRKKRC VDKALLEIPE 660 DELDLRTLPI KDIILLAEHR ERQAKKDAMT SNMSPSNQSG GDSLHGAGAY NEHEFSGSED 720 GEDPYDDQDN ERIASTSVLY NYQTFMEKTP RGKWSKQDTE LFYEAIRELG TDFSMIQQLF 780 PDKTRRQIKL KYKKEEREHY LRLRDAIHNR AKDHSHYKLL IERLQLASTK TEEVMDLTTG 840 ANEEVVEAAT IKHDADVKQQ EDSPAVQNPE EYDDSEDDSL KWSQYKSLY*

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence Send to blast

MDPFDDLLPE TTVARIRPGT KFAPKAKAKQ RPRKEVPSSE HATSSKDAGN ECQNVGPSTL  60
SVPAKESMGF IHQTQVQFPN SESGNPDQDS VQGDSAALVD SSTITVSEIG AGQNSTNFLE  120
SAFEAGPTDF DGDSVTNFVF ETNLNNGTTQ PVHHANVVVN KLNNLAAPFS SCSTIDRMKE  180
PPKNWEGSFL DINKYLELID NSLQLGTDLS FGSVSDNKVV SAEIELDPFS DVLPDLPARN  240
AHKFKPKIKP RPRVGNMPAS ASSDVMMEKS VELPTSCSTD FQSFQSTSVL NQSTSLPLPT  300
SEILRKTYMP DKFGNTSSNV SISEDSKSLA AATPSQLDSL NAMLSVDAVH NGTRDWPSTF  360
GKSSGEAADI FSGLESLDDF LTQATTDTGK PALHSFNEKG AEENFVTPVC SSINSFRECD  420
NTQVQRCPTP QDPVTFNEAT DLNESDTHTK NRMSETEEIV DLNPAYPIDD VFDYQSMKSG  480
EDPTSGIPVH EDLTNAADSS TLADLLHAND SREKEVANQR NRDGSDSCSL RKNKRSSISG  540
EEDNGGKTSR QRRKLAACKP KNSSLNEDVE DDNDIDSPYH SNEHELQEND DDYEVDHSSK  600
KKRGSKSSQK KSVAKSGKTS QRRKKADDDV QKTKEPPKKF SHSTRRKKRC VDKALLEIPE  660
DELDLRTLPI KDIILLAEHR ERQAKKDAMT SNMSPSNQSG GDSLHGAGAY NEHEFSGSED  720
GEDPYDDQDN ERIASTSVLY NYQTFMEKTP RGKWSKQDTE LFYEAIRELG TDFSMIQQLF  780
PDKTRRQIKL KYKKEEREHY LRLRDAIHNR AKDHSHYKLL IERLQLASTK TEEVMDLTTG  840
ANEEVVEAAT IKHDADVKQQ EDSPAVQNPE EYDDSEDDSL KWSQYKSLY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi11g01070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014520701.1	0.0	uncharacterized protein LOC106777581
Refseq	XP_014520702.1	0.0	uncharacterized protein LOC106777581
Refseq	XP_014520703.1	0.0	uncharacterized protein LOC106777581
Refseq	XP_014520704.1	0.0	uncharacterized protein LOC106777581
Refseq	XP_014520705.1	0.0	uncharacterized protein LOC106777581
Refseq	XP_022631476.1	0.0	uncharacterized protein LOC106777581
TrEMBL	A0A1S3VQP0	0.0	A0A1S3VQP0_VIGRR; uncharacterized protein LOC106777581
STRING	XP_007157057.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3666	29	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-47	MYB_related family protein