PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g00780.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CPP
Protein Properties Length: 774aa    MW: 84816.9 Da    PI: 6.2152
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g00780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.83.2e-16483520340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Vradi11g00780.1 483 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 520
                      89**********************************96 PP
2TCR50.25e-16567605139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++k+gCnCkks+ClkkYCeC++ g+ Cs  C+Ce+CkN 
  Vradi11g00780.1 567 RHKRGCNCKKSSCLKKYCECYQGGVGCSIGCRCEGCKNA 605
                      589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-18481522IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.102482607IPR005172CRC domain
PfamPF036381.1E-11484519IPR005172CRC domain
SMARTSM011146.6E-17567608IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-11569605IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MDTPERNQIS ATLSKFEDSP VFNYINSLSP IKPVKSVPIS QTFNSLSFSS PPSVFTSPHV  60
SCLKESRFLR RHIPLGTWKP KVSSEDVNKV HTSEEETLAD SKRAHHNKSE SQENTEKRAS  120
IELSSEHIKF SVEPQQSLKY DTCGSPGYDP SICDHEDNTL LELPGEAAAD AGYVQEGCKT  180
DSVESEVHLQ EICQMEPKSE DPDCYWDSLI PDGSDMLIFN SPGEAEAFKG LMNKPLDPSI  240
RLSDFMSVLP LSAVHNGRKM FIVDSVASGS EHEIGDHCSQ PTIAATDTDQ TRDNLADVVL  300
VTSNYNENAN DQLVSVTHRA IRRRCLDFEM ANVQKKNSDD NSKGSSSTSE SDERNVANEK  360
QLLPAKLNQR GILQGIGLHL NALAALKEYK GIQIENLSSG RQLSLPNSTS LQISTSQEQQ  420
HLSLVPVSSE RDLDSSDNGL QPTEDCSQPS VYMAGEDFNK NSPRKKKQVQ LRKLETPGET  480
EGCKRCNCKK SKCLKLYCEC FAAGVYCIEP CSCQDCFNKP VHEDTVLQTR KQIESRNPLA  540
FAPKVIRSSD SVPEIGDDPN KTPASARHKR GCNCKKSSCL KKYCECYQGG VGCSIGCRCE  600
GCKNAFGRKD GSAPVSIETE QEETEATDKG MPEKASQKIE IQNTAEDHPD SAAMSTPLRL  660
SRPFVPLPFS SKGKAPRSFV TTISGSALFA SQKLGKTNSL WSQSKHFQSV PDDEMQDILL  720
GDTSPITCIK TSSPNGKRIS SPSCDMGSSP SRRGGRKLIL QSIPSFPSLT PHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1748660414120Protein lin-54 homolog
5fd3_B3e-1748660414120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g00780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521196.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A1S3VS320.0A0A1S3VS32_VIGRR; protein tesmin/TSO1-like CXC 2
STRINGXP_007157112.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-138TESMIN/TSO1-like CXC 2