PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g12420.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 569aa    MW: 62657.8 Da    PI: 4.3113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g12420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012109132123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C +C++sF  k+++ +H+ + H
  Vradi10g12420.1 109 FECRKCNMSFDEKDSYLQHLLSvH 132
                      89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.017109132IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411109137IPR007087Zinc finger, C2H2
PROSITE patternPS000280111132IPR007087Zinc finger, C2H2
SMARTSM003550.37156178IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642156183IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
AYPIFDIPPC SPSGQHFVSC KEVSSYLQSL LGNGDGQSQS SRRSENLVQE QIVPAEKSAG  60
VTPERQDQRQ IVAVNAEVPG LFAGAHERVK EVALLGIENL ADVQIQDLFE CRKCNMSFDE  120
KDSYLQHLLS VHQRTTRRYR LGSSVGDGVI IKDGKFECQF CHKVFLERRR YNGHVGIHVR  180
NYVRRVEDSP GQINVQRTDD KSPVREDMPL RISKMDALIE IAQNSIMEGC VTESHHLAKL  240
NGIPASDVAV GYLDQDGNSE APISEKQMED SLTKKNVDHH GMDGKVEEVD DDNRVIDVKM  300
VTFLDNMGLL SVNKQDVKAS ETSEIKDDVE LTIEELDQSG IDLDGVSEVR ILPLSELNII  360
PESEKGENSE SSNAKVQFKP DEGISNKSEL EFGLNCLKDV PVTVSTDVPE MVMAASEENV  420
VHSSAFNSSI STEQPMDCLP AFSSDKGGKQ FSSLENEHDS VKGLEELRFD EIDSVDYDFA  480
RIQDSPSPPA VSAELANDTV MEDTYLSSVQ FESQLTTVCV WCGIEFNHDA VNSEIQPDSV  540
GFMCPACKAK ISGQINVLDC ESPNAGCL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g12420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518609.10.0uncharacterized protein LOC106775889
RefseqXP_014518610.10.0uncharacterized protein LOC106775889
RefseqXP_014518611.10.0uncharacterized protein LOC106775889
TrEMBLA0A1S3VJS30.0A0A1S3VJS3_VIGRR; uncharacterized protein LOC106775889
STRINGXP_007148405.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58101719